org.molgenis.omx.xgap

Class SNP

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Marker

org.molgenis.omx.xgap.SNP

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable, Locus

@Entity
public class SNP
extends Marker
implements Entity

SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases. A single-nucleotide polymorphism is a DNA sequence variation occurring when a single nucleotide in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes in an individual..

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	ENTITY_NAME
static String	ID
static String	POLYMORPHISM
static String	STATUS

Fields inherited from class org.molgenis.omx.xgap.Marker

BPEND, BPSTART, CHROMOSOME, CM, REPORTSFOR, SEQ, SYMBOL

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
SNP()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
Iterable<String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
String	getEntityName()
Integer	getIdValue()
List<String>	getLabelAttributeNames()
List<Polymorphism>	getPolymorphism() Get the The polymorphism that belongs to this SNP..
String	getStatus() Get the The status of this SNP, eg 'confirmed'..
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setPolymorphism(List<Polymorphism> polymorphism) Set the The polymorphism that belongs to this SNP..
void	setStatus(String status) Set the The status of this SNP, eg 'confirmed'..
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.xgap.Marker

getBpEnd, getBpStart, getChromosome, getCM, getReportsFor, getReportsForMarkerCollection, getSeq, getSymbol, setBpEnd, setBpStart, setChromosome, setCM, setReportsFor, setReportsForMarkerCollection, setSeq, setSymbol

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

STATUS

public static final String STATUS

See Also:

Constant Field Values

POLYMORPHISM

public static final String POLYMORPHISM

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

SNP

public SNP()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class Marker

getStatus

public String getStatus()

Get the The status of this SNP, eg 'confirmed'..

Returns:

status.

setStatus

public void setStatus(String status)

Set the The status of this SNP, eg 'confirmed'..

Parameters:

status -

getPolymorphism

public List<Polymorphism> getPolymorphism()

Get the The polymorphism that belongs to this SNP..

Returns:

polymorphism.

setPolymorphism

public void setPolymorphism(List<Polymorphism> polymorphism)

Set the The polymorphism that belongs to this SNP..

Parameters:

polymorphism -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class Marker

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class Marker

toString

public String toString()

Overrides:

toString in class Marker

toString

public String toString(boolean verbose)

Overrides:

toString in class Marker

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class Marker

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class Marker

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class Marker

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class Marker

equals

public boolean equals(Object obj)

Overrides:

equals in class Marker

hashCode

public int hashCode()

Overrides:

hashCode in class Marker

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class Marker