org.molgenis.omx.xgap

Class Spot

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Probe

org.molgenis.omx.xgap.Spot

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable, Locus

@Entity
public class Spot
extends Probe
implements Entity

Spot: This is the spot on a microarray.
Note: We don't distinquish between probes (the sequence) and spots (the sequence as spotted on the array). .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	ENTITY_NAME
static String	GRIDX
static String	GRIDY
static String	ID
static String	X
static String	Y

Fields inherited from class org.molgenis.omx.xgap.Probe

BPEND, BPSTART, CHROMOSOME, CM, MISMATCH, PROBESET, REPORTSFOR, SEQ, SYMBOL

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Spot()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
Iterable<String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
String	getEntityName()
Integer	getGridX() Get the Meta Row.
Integer	getGridY() Get the Meta Column.
Integer	getIdValue()
List<String>	getLabelAttributeNames()
Integer	getX() Get the Row.
Integer	getY() Get the Column.
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setGridX(Integer gridX) Set the Meta Row.
void	setGridY(Integer gridY) Set the Meta Column.
void	setX(Integer x) Set the Row.
void	setY(Integer y) Set the Column.
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.xgap.Probe

getBpEnd, getBpStart, getChromosome, getCM, getMismatch, getProbeSet, getReportsFor, getSeq, getSymbol, setBpEnd, setBpStart, setChromosome, setCM, setMismatch, setProbeSet, setReportsFor, setSeq, setSymbol

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

X

public static final String X

See Also:

Constant Field Values

Y

public static final String Y

See Also:

Constant Field Values

GRIDX

public static final String GRIDX

See Also:

Constant Field Values

GRIDY

public static final String GRIDY

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Spot

public Spot()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class Probe

getX

public Integer getX()

Get the Row.

Returns:

x.

setX

public void setX(Integer x)

Set the Row.

Parameters:

x -

getY

public Integer getY()

Get the Column.

Returns:

y.

setY

public void setY(Integer y)

Set the Column.

Parameters:

y -

getGridX

public Integer getGridX()

Get the Meta Row.

Returns:

gridX.

setGridX

public void setGridX(Integer gridX)

Set the Meta Row.

Parameters:

gridX -

getGridY

public Integer getGridY()

Get the Meta Column.

Returns:

gridY.

setGridY

public void setGridY(Integer gridY)

Set the Meta Column.

Parameters:

gridY -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class Probe

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class Probe

toString

public String toString()

Overrides:

toString in class Probe

toString

public String toString(boolean verbose)

Overrides:

toString in class Probe

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class Probe

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class Probe

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class Probe

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class Probe

equals

public boolean equals(Object obj)

Overrides:

equals in class Probe

hashCode

public int hashCode()

Overrides:

hashCode in class Probe

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class Probe