org.molgenis.omx.protocolviewer

Class ProtocolViewerServiceImpl

java.lang.Object

org.molgenis.omx.protocolviewer.ProtocolViewerServiceImpl

All Implemented Interfaces:

ProtocolViewerService

@Service
public class ProtocolViewerServiceImpl
extends Object
implements ProtocolViewerService

Constructor Summary

Constructors

Constructor and Description
ProtocolViewerServiceImpl()

Method Summary

Methods

Modifier and Type	Method and Description
void	addToStudyDefinitionDraftForCurrentUser(String resourceUri, String catalogId) Add a catalog item or catalog group (implies all items in a group) to the study definition draft
StudyDefinition	createStudyDefinitionDraftForCurrentUser(String catalogId) Creates a study definition draft for the current logged in user
void	createStudyDefinitionDraftXlsForCurrentUser(OutputStream outputStream, String catalogId) Write the study definition draft for the current user to the given stream
Iterable<CatalogMeta>	getCatalogs() Gets all active catalog meta data
StudyDefinition	getStudyDefinitionDraftForCurrentUser(String catalogId) Gets the current study definition draft for the current logged in user
StudyDefinition	getStudyDefinitionForCurrentUser(Integer id) Returns the given order for the current user
List<StudyDefinition>	getStudyDefinitionsForCurrentUser() Returns order for the current user
void	removeFromStudyDefinitionDraftForCurrentUser(String resourceUri, String catalogId) Remove a catalog item or catalog group (implies all items in a group) from the study definition draft
void	submitStudyDefinitionDraftForCurrentUser(String studyName, javax.servlet.http.Part requestForm, String catalogId) Place an order for the current user

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProtocolViewerServiceImpl

public ProtocolViewerServiceImpl()

Method Detail

getCatalogs

@PreAuthorize(value="hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_READ_PROTOCOLVIEWER\')")
@Transactional(readOnly=true)
public Iterable<CatalogMeta> getCatalogs()

Description copied from interface: ProtocolViewerService

Gets all active catalog meta data

Specified by:

getCatalogs in interface ProtocolViewerService

Returns:

meta data of active catalogs

getStudyDefinitionDraftForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_READ_PROTOCOLVIEWER\')")
@Transactional(readOnly=true)
public StudyDefinition getStudyDefinitionDraftForCurrentUser(String catalogId)
                                                      throws UnknownCatalogException

Description copied from interface: ProtocolViewerService

Gets the current study definition draft for the current logged in user

Specified by:

getStudyDefinitionDraftForCurrentUser in interface ProtocolViewerService

Returns:

the current study definition draft or null if no study definition draft exists

Throws:

UnknownCatalogException

createStudyDefinitionDraftForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_WRITE_PROTOCOLVIEWER\')")
@Transactional
public StudyDefinition createStudyDefinitionDraftForCurrentUser(String catalogId)
                                                         throws UnknownCatalogException

Description copied from interface: ProtocolViewerService

Creates a study definition draft for the current logged in user

Specified by:

createStudyDefinitionDraftForCurrentUser in interface ProtocolViewerService

Parameters:

catalogId - id of the catalog used for this study definition

Returns:

empty draft study definition

Throws:

UnknownCatalogException

getStudyDefinitionsForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_READ_PROTOCOLVIEWER\')")
@Transactional(readOnly=true)
public List<StudyDefinition> getStudyDefinitionsForCurrentUser()

Description copied from interface: ProtocolViewerService

Returns order for the current user

Specified by:

getStudyDefinitionsForCurrentUser in interface ProtocolViewerService

Returns:

getStudyDefinitionForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_READ_PROTOCOLVIEWER\')")
@Transactional(readOnly=true)
public StudyDefinition getStudyDefinitionForCurrentUser(Integer id)
                                                 throws UnknownStudyDefinitionException

Description copied from interface: ProtocolViewerService

Returns the given order for the current user

Specified by:

getStudyDefinitionForCurrentUser in interface ProtocolViewerService

Returns:

Throws:

UnknownStudyDefinitionException

submitStudyDefinitionDraftForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_WRITE_PROTOCOLVIEWER\')")
@Transactional(rollbackFor={javax.mail.MessagingException.class,java.io.IOException.class,UnknownCatalogException.class,UnknownStudyDefinitionException.class})
public void submitStudyDefinitionDraftForCurrentUser(String studyName,
                                                                                                                                                                                                     javax.servlet.http.Part requestForm,
                                                                                                                                                                                                     String catalogId)
                                              throws javax.mail.MessagingException,
                                                     IOException,
                                                     UnknownCatalogException,
                                                     UnknownStudyDefinitionException

Description copied from interface: ProtocolViewerService

Place an order for the current user

Specified by:

submitStudyDefinitionDraftForCurrentUser in interface ProtocolViewerService

Throws:

javax.mail.MessagingException

IOException

UnknownCatalogException

UnknownStudyDefinitionException

addToStudyDefinitionDraftForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_WRITE_PROTOCOLVIEWER\')")
@Transactional(rollbackFor=UnknownCatalogException.class)
public void addToStudyDefinitionDraftForCurrentUser(String resourceUri,
                                                                                                   String catalogId)
                                             throws UnknownCatalogException

Description copied from interface: ProtocolViewerService

Add a catalog item or catalog group (implies all items in a group) to the study definition draft

Specified by:

addToStudyDefinitionDraftForCurrentUser in interface ProtocolViewerService

Throws:

UnknownCatalogException

removeFromStudyDefinitionDraftForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_WRITE_PROTOCOLVIEWER\')")
@Transactional(rollbackFor=UnknownCatalogException.class)
public void removeFromStudyDefinitionDraftForCurrentUser(String resourceUri,
                                                                                                        String catalogId)
                                                  throws UnknownCatalogException

Description copied from interface: ProtocolViewerService

Remove a catalog item or catalog group (implies all items in a group) from the study definition draft

Specified by:

removeFromStudyDefinitionDraftForCurrentUser in interface ProtocolViewerService

Throws:

UnknownCatalogException

createStudyDefinitionDraftXlsForCurrentUser

@PreAuthorize(value="isAuthenticated() and hasAnyRole(\'ROLE_SU\', \'ROLE_PLUGIN_READ_PROTOCOLVIEWER\')")
@Transactional(rollbackFor={java.io.IOException.class,UnknownCatalogException.class})
public void createStudyDefinitionDraftXlsForCurrentUser(OutputStream outputStream,
                                                                                                                                String catalogId)
                                                 throws IOException,
                                                        UnknownCatalogException

Description copied from interface: ProtocolViewerService

Write the study definition draft for the current user to the given stream

Specified by:

createStudyDefinitionDraftXlsForCurrentUser in interface ProtocolViewerService

Throws:

IOException

UnknownCatalogException