org.molgenis.ontology.importer.repository

Class OntologyRepositoryCollection

java.lang.Object

org.molgenis.data.support.FileRepositoryCollection

org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

All Implemented Interfaces:

Iterable<Repository>, RepositoryCollection

public class OntologyRepositoryCollection
extends FileRepositoryCollection

RepositoryCollection for the import of an owl file. Reads the owl file's contents using an OntologyLoader. Fills InMemoryRepositorys with their contents.

Field Summary

Fields inherited from class org.molgenis.data.support.FileRepositoryCollection

cellProcessors

Constructor Summary

Constructors

Constructor and Description
OntologyRepositoryCollection(File file) Creates a new OntologyRepositoryCollection for an ontology file

Method Summary

Modifier and Type	Method and Description
Repository	addEntityMeta(EntityMetaData entityMeta)
Iterable<String>	getEntityNames()
String	getName()
Repository	getRepository(String name)
boolean	hasRepository(String name)
Iterator<Repository>	iterator()

Methods inherited from class org.molgenis.data.support.FileRepositoryCollection

addCellProcessor, getFileNameExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.RepositoryCollection

stream

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

OntologyRepositoryCollection

public OntologyRepositoryCollection(File file)
                             throws org.semanticweb.owlapi.model.OWLOntologyCreationException,
                                    FileNotFoundException,
                                    IOException

Creates a new OntologyRepositoryCollection for an ontology file

Parameters:

file - the ontology file

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

FileNotFoundException

IOException

Method Detail

getEntityNames

public Iterable<String> getEntityNames()

Specified by:

getEntityNames in interface RepositoryCollection

Specified by:

getEntityNames in class FileRepositoryCollection

getName

public String getName()

addEntityMeta

public Repository addEntityMeta(EntityMetaData entityMeta)

iterator

public Iterator<Repository> iterator()

getRepository

public Repository getRepository(String name)

Specified by:

getRepository in interface RepositoryCollection

Specified by:

getRepository in class FileRepositoryCollection

hasRepository

public boolean hasRepository(String name)