org.molgenis.ontology.controller

Class OntologyServiceController

java.lang.Object

org.molgenis.ui.MolgenisPluginController

org.molgenis.ontology.controller.OntologyServiceController

@Controller
 @RequestMapping(value="/plugin/ontologyservice")
public class OntologyServiceController
extends MolgenisPluginController

Field Summary

Fields

Modifier and Type	Field and Description
static String	ID
static int	INVALID_TOTAL_NUMBER
static String	URI

Fields inherited from class org.molgenis.ui.MolgenisPluginController

PLUGIN_URI_PREFIX

Constructor Summary

Constructors

Constructor and Description
OntologyServiceController()

Method Summary

Modifier and Type	Method and Description
String	calculateRoc(String entityName, org.springframework.ui.Model model)
void	deleteResult(String entityName)
void	download(String entityName, javax.servlet.http.HttpServletResponse response, org.springframework.ui.Model model)
String	init(org.springframework.ui.Model model)
String	match(String entityName, String ontologyIri, String inputTerms, org.springframework.ui.Model model, javax.servlet.http.HttpServletRequest httpServletRequest)
OntologyServiceResult	matchResult(Map<String,Object> request, javax.servlet.http.HttpServletRequest httpServletRequest)
EntityCollectionResponse	matchResult(OntologyServiceRequest ontologyServiceRequest, javax.servlet.http.HttpServletRequest httpServletRequest)
String	matchResult(String entityName, org.springframework.ui.Model model)
String	matchTask(org.springframework.ui.Model model)
OntologyServiceResult	search(Map<String,Object> request, javax.servlet.http.HttpServletRequest httpServletRequest)
String	updateThreshold(String threshold, String entityName, org.springframework.ui.Model model)
String	upload(String entityName, String ontologyIri, javax.servlet.http.Part file, org.springframework.ui.Model model, javax.servlet.http.HttpServletRequest httpServletRequest)

Methods inherited from class org.molgenis.ui.MolgenisPluginController

getId, getPluginSettings, getUri

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

URI

public static final String URI

See Also:

Constant Field Values

INVALID_TOTAL_NUMBER

public static final int INVALID_TOTAL_NUMBER

See Also:

Constant Field Values

Constructor Detail

OntologyServiceController

public OntologyServiceController()

Method Detail

init

@RequestMapping(method=GET)
public String init(org.springframework.ui.Model model)

matchTask

@RequestMapping(method=GET,
                value="/newtask")
public String matchTask(org.springframework.ui.Model model)

calculateRoc

@RequestMapping(method=GET,
                value="/calculate/{entityName}")
public String calculateRoc(@PathVariable
                                                                                                        String entityName,
                                                                                                        org.springframework.ui.Model model)
                                                                                                 throws IOException,
                                                                                                        MolgenisInvalidFormatException

Throws:

IOException

MolgenisInvalidFormatException

updateThreshold

@RequestMapping(method=POST,
                value="/threshold/{entityName}")
public String updateThreshold(@RequestParam(value="threshold",required=true)
                                                                                                            String threshold,
                                                                                                            @PathVariable
                                                                                                            String entityName,
                                                                                                            org.springframework.ui.Model model)

matchResult

@RequestMapping(method=GET,
                value="/result/{entityName}")
public String matchResult(@PathVariable(value="entityName")
                                                                                                    String entityName,
                                                                                                    org.springframework.ui.Model model)

deleteResult

@RequestMapping(method=POST,
                value="/delete")
 @ResponseStatus(value=OK)
public void deleteResult(@RequestBody
                                                                                                                  String entityName)

matchResult

@RequestMapping(method=POST,
                value="/match/retrieve")
 @ResponseBody
public EntityCollectionResponse matchResult(@RequestBody
                                                                                                                                 OntologyServiceRequest ontologyServiceRequest,
                                                                                                                                 javax.servlet.http.HttpServletRequest httpServletRequest)

match

@RequestMapping(method=POST,
                value="/match")
public String match(@RequestParam(value="taskName",required=true)
                                                                                 String entityName,
                                                                                 @RequestParam(value="selectOntologies",required=true)
                                                                                 String ontologyIri,
                                                                                 @RequestParam(value="inputTerms",required=true)
                                                                                 String inputTerms,
                                                                                 org.springframework.ui.Model model,
                                                                                 javax.servlet.http.HttpServletRequest httpServletRequest)
                                                                          throws Exception

Throws:

Exception

upload

@RequestMapping(method=POST,
                value="/match/upload",
                headers="Content-Type=multipart/form-data")
public String upload(@RequestParam(value="taskName",required=true)
                                                                                                                                                     String entityName,
                                                                                                                                                     @RequestParam(value="selectOntologies",required=true)
                                                                                                                                                     String ontologyIri,
                                                                                                                                                     @RequestParam(value="file",required=true)
                                                                                                                                                     javax.servlet.http.Part file,
                                                                                                                                                     org.springframework.ui.Model model,
                                                                                                                                                     javax.servlet.http.HttpServletRequest httpServletRequest)
                                                                                                                                              throws Exception

Throws:

Exception

matchResult

@RequestMapping(method=POST,
                value="/match/entity")
 @ResponseBody
public OntologyServiceResult matchResult(@RequestBody
                                                                                                                            Map<String,Object> request,
                                                                                                                            javax.servlet.http.HttpServletRequest httpServletRequest)

search

@RequestMapping(method=POST,
                value="/search")
 @ResponseBody
public OntologyServiceResult search(@RequestBody
                                                                                                                 Map<String,Object> request,
                                                                                                                 javax.servlet.http.HttpServletRequest httpServletRequest)

download

@RequestMapping(method=GET,
                value="/match/download/{entityName}")
public void download(@PathVariable
                                                                                                       String entityName,
                                                                                                       javax.servlet.http.HttpServletResponse response,
                                                                                                       org.springframework.ui.Model model)
                                                                                                throws IOException

Throws:

IOException