A C D E F G H I L M N O P R S T U V Z

A

addClass(OWLClass, OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

addEntityMeta(EntityMetaData) - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

addSynonymsProperties(Set<String>) - Method in class org.molgenis.ontology.utils.OntologyLoader

ALLOWED_IDENTIFIER - Static variable in class org.molgenis.ontology.sorta.repo.SortaCsvRepository

C

call(Progress) - Method in class org.molgenis.ontology.sorta.job.SortaJobImpl

canImport(File, RepositoryCollection) - Method in class org.molgenis.ontology.importer.OntologyImportService

COMBINED_SCORE - Static variable in class org.molgenis.ontology.sorta.meta.OntologyTermHitEntityMetaData

convert(File) - Static method in class org.molgenis.ontology.utils.LifeLinesCodeToEmxConvertor

count() - Method in class org.molgenis.ontology.sorta.repo.SortaCsvRepository

count() - Method in class org.molgenis.ontology.utils.OntologyLoader

countMatchResult(String) - Method in class org.molgenis.ontology.controller.SortaServiceController

create(SortaJobExecution) - Method in class org.molgenis.ontology.sorta.job.SortaJobFactory

createClass(String, Set<OWLClass>) - Method in class org.molgenis.ontology.utils.OntologyLoader

createStemmedWordSet(String) - Method in class org.molgenis.ontology.roc.InformationContentService

D

DEFAULT_MATCHING_IDENTIFIER - Static variable in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

DEFAULT_MATCHING_NAME_FIELD - Static variable in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

DEFAULT_MATCHING_SYNONYM_PREFIX_FIELD - Static variable in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

DEFAULT_SEPARATOR - Static variable in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

delete(Model) - Method in class org.molgenis.ontology.controller.OntologyManagerController

DELETE_URL - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

deleteResult(String, Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

doImport(RepositoryCollection, DatabaseAction, String) - Method in class org.molgenis.ontology.importer.OntologyImportService

download(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.ontology.controller.SortaServiceAnonymousController

download(String, HttpServletResponse, Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

E

ElasticsearchIndexManagerController - Class in org.molgenis.data.elasticsearch.admin

Index manager plugin

ElasticsearchIndexManagerController() - Constructor for class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerController

ElasticsearchIndexManagerService - Interface in org.molgenis.data.elasticsearch.admin

ElasticsearchIndexManagerServiceImpl - Class in org.molgenis.data.elasticsearch.admin

Elasticsearch index manager service that handles authorization

ElasticsearchIndexManagerServiceImpl(DataService) - Constructor for class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerServiceImpl

ENTITY_NAME - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

ENTITY_NAME - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

equals(Object) - Method in class org.molgenis.ontology.roc.OntologyWord

equals(Object) - Method in class org.molgenis.ontology.sorta.bean.OntologyTermHitEntity

extractOWLClassId(OWLEntity) - Method in class org.molgenis.ontology.utils.OntologyLoader

F

findMatchingOntologyTerms(Map<String, Object>, HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceController

findOntologyTermEntities(String, String) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

findOntologyTermEntities(String, Entity) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

findOntologyTermEntities(String, String) - Method in interface org.molgenis.ontology.sorta.service.SortaService

Find a list of relevant ontologyterm entities using lexical matching (elasticsearch + ngram) in generic type based on given ontologyIri and queryString

findOntologyTermEntities(String, Entity) - Method in interface org.molgenis.ontology.sorta.service.SortaService

Find a list of relevant ontologyterm typed entities using lexical matching (elasticsearch + ngram) in generic type based on given ontologyIri and a set of query inputs (name, synonym, ontology database id, e.g.

G

getAllAnnotationAxiom(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getAllclasses() - Method in class org.molgenis.ontology.utils.OntologyLoader

getAllDatabaseIds(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getAllOntologies() - Method in class org.molgenis.ontology.controller.OntologyManagerController

getAllOntologyEntities() - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

getAllOntologyEntities() - Method in interface org.molgenis.ontology.sorta.service.SortaService

Get all ontology entities in generic type

getAssociatedClasses(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getCapabilities() - Method in class org.molgenis.ontology.sorta.repo.SortaCsvRepository

getChildClass(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getDatabaseIds(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getDefinition(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getDeleteUrl() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getEntityAsMap(Iterable<? extends Entity>) - Static method in class org.molgenis.ontology.utils.SortaServiceUtil

getEntityAsMap(Entity) - Static method in class org.molgenis.ontology.utils.SortaServiceUtil

getEntityMetaData() - Method in class org.molgenis.ontology.sorta.repo.SortaCsvRepository

getEntityNames() - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

getEntityPager() - Method in class org.molgenis.ontology.sorta.request.SortaServiceRequest

getFilterQuery() - Method in class org.molgenis.ontology.sorta.request.SortaServiceRequest

getHashToRetrieveClass() - Method in class org.molgenis.ontology.utils.OntologyLoader

getId(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getIndexedEntities() - Method in interface org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerService

Returns all indexed entity meta data sorted by entity label

getIndexedEntities() - Method in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerServiceImpl

getInputData() - Method in class org.molgenis.ontology.sorta.request.SortaServiceResponse

getJobs(Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

getLabel(OWLEntity) - Method in class org.molgenis.ontology.utils.OntologyLoader

getMessage() - Method in class org.molgenis.ontology.sorta.request.SortaServiceResponse

getMustChangeEntityName() - Method in class org.molgenis.ontology.importer.OntologyImportService

getName() - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

getName() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getNodePath() - Method in class org.molgenis.ontology.utils.OWLClassContainer

getOntologyEntity(String) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

getOntologyEntity(String) - Method in interface org.molgenis.ontology.sorta.service.SortaService

Get a specified ontology entity in generic type based on the given ontologyIri

getOntologyFilePath() - Method in class org.molgenis.ontology.utils.OntologyLoader

getOntologyIri() - Method in class org.molgenis.ontology.roc.OntologyWord

getOntologyIri() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getOntologyIri() - Method in class org.molgenis.ontology.sorta.request.SortaServiceRequest

getOntologyIRI() - Method in class org.molgenis.ontology.utils.OntologyLoader

getOntologyLabel() - Method in class org.molgenis.ontology.utils.OntologyLoader

getOntologyName() - Method in class org.molgenis.ontology.utils.OntologyLoader

getOntologyTermEntity(String, String) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

getOntologyTermEntity(String, String) - Method in interface org.molgenis.ontology.sorta.service.SortaService

Get a specified ontologyterm in generic type based on the given ontologyIri and ontologyTermIri

getOntologyTerms() - Method in class org.molgenis.ontology.sorta.request.SortaServiceResponse

getOrder() - Method in class org.molgenis.ontology.importer.OntologyImporterServiceRegistrator

getOrder() - Method in class org.molgenis.ontology.importer.OntologyImportService

getOwlClass() - Method in class org.molgenis.ontology.utils.OWLClassContainer

getRepository(String) - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

getResultEntityName() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getRootClasses() - Method in class org.molgenis.ontology.utils.OntologyLoader

getSearchResult() - Method in class org.molgenis.ontology.response.OntologyServiceBatchResponse

getSortaJobExecutionId() - Method in class org.molgenis.ontology.sorta.request.SortaServiceRequest

getSourceEntityName() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getSubClassAxiomsForSubClass(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getSubClassAxiomsForSuperClass(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getSupportedDatabaseActions() - Method in class org.molgenis.ontology.importer.OntologyImportService

getSupportedFileExtensions() - Method in class org.molgenis.ontology.importer.OntologyImportService

getSynonyms(OWLClass) - Method in class org.molgenis.ontology.utils.OntologyLoader

getTerm() - Method in class org.molgenis.ontology.response.OntologyServiceBatchResponse

getThreshold() - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

getTopClass() - Method in class org.molgenis.ontology.utils.OntologyLoader

getTotalHitCount() - Method in class org.molgenis.ontology.sorta.request.SortaServiceResponse

getWord() - Method in class org.molgenis.ontology.roc.OntologyWord

H

hashCode() - Method in class org.molgenis.ontology.roc.OntologyWord

hasRepository(String) - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

I

ID - Static variable in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerController

ID - Static variable in class org.molgenis.ontology.controller.OntologyManagerController

ID - Static variable in class org.molgenis.ontology.controller.SortaServiceAnonymousController

ID - Static variable in class org.molgenis.ontology.controller.SortaServiceController

ID - Static variable in class org.molgenis.ontology.tree.OntologyTreeController

IDENTIFIER - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

InformationContentService - Class in org.molgenis.ontology.roc

InformationContentService(DataService) - Constructor for class org.molgenis.ontology.roc.InformationContentService

informationContentService() - Method in class org.molgenis.ontology.SortaConfiguration

init(Model) - Method in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerController

init(Model) - Method in class org.molgenis.ontology.controller.OntologyManagerController

init(Model) - Method in class org.molgenis.ontology.controller.SortaServiceAnonymousController

init(Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

init(Model) - Method in class org.molgenis.ontology.tree.OntologyTreeController

initialize() - Method in interface org.molgenis.ontology.initializer.OntologyScriptInitializer

initialize() - Method in class org.molgenis.ontology.initializer.OntologyScriptInitializerImpl

INPUT_TERM - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

INSTANCE - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

INSTANCE - Static variable in class org.molgenis.ontology.sorta.meta.OntologyTermHitEntityMetaData

INSTANCE - Static variable in class org.molgenis.ontology.sorta.meta.SortaJobExecutionMetaData

integrationTestMetaData(MetaDataService, RepositoryCollection, String) - Method in class org.molgenis.ontology.importer.OntologyImportService

isMatched() - Method in class org.molgenis.ontology.sorta.request.SortaServiceRequest

isRoot() - Method in class org.molgenis.ontology.utils.OWLClassContainer

iterator() - Method in class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

iterator() - Method in class org.molgenis.ontology.sorta.repo.SortaCsvRepository

L

LifeLinesCodeToEmxConvertor - Class in org.molgenis.ontology.utils

LifeLinesCodeToEmxConvertor() - Constructor for class org.molgenis.ontology.utils.LifeLinesCodeToEmxConvertor

loadOntology(String, File) - Method in class org.molgenis.ontology.utils.OntologyLoader

M

main(String[]) - Static method in class org.molgenis.ontology.utils.LifeLinesCodeToEmxConvertor

match(String, String, HttpServletRequest, Model) - Method in class org.molgenis.ontology.controller.SortaServiceAnonymousController

match(String, String, String, Model, HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceController

MATCH_VIEW_NAME - Static variable in class org.molgenis.ontology.controller.SortaServiceController

MATCHED_TERM - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

MatchingTaskContentEntityMetaData - Class in org.molgenis.ontology.sorta.meta

matchResult(HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceAnonymousController

matchResult(String, Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

matchTask(Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

N

NAME - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

O

onApplicationEvent(ContextRefreshedEvent) - Method in class org.molgenis.ontology.importer.OntologyImporterServiceRegistrator

ONTOLOGY_IRI - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

OntologyDataConfig - Class in org.molgenis.ontology

OntologyDataConfig() - Constructor for class org.molgenis.ontology.OntologyDataConfig

OntologyImporterServiceRegistrator - Class in org.molgenis.ontology.importer

OntologyImporterServiceRegistrator(OntologyImportService, ImportServiceFactory, OntologyScriptInitializer) - Constructor for class org.molgenis.ontology.importer.OntologyImporterServiceRegistrator

OntologyImportService - Class in org.molgenis.ontology.importer

OntologyImportService(FileRepositoryCollectionFactory, DataService, SearchService, PermissionSystemService) - Constructor for class org.molgenis.ontology.importer.OntologyImportService

OntologyLoader - Class in org.molgenis.ontology.utils

OntologyLoader(OWLOntologyManager, OWLDataFactory) - Constructor for class org.molgenis.ontology.utils.OntologyLoader

OntologyLoader(String, File) - Constructor for class org.molgenis.ontology.utils.OntologyLoader

OntologyManagerController - Class in org.molgenis.ontology.controller

OntologyManagerController() - Constructor for class org.molgenis.ontology.controller.OntologyManagerController

OntologyRepositoryCollection - Class in org.molgenis.ontology.importer.repository

RepositoryCollection for the import of an owl file.

OntologyRepositoryCollection(File) - Constructor for class org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

Creates a new OntologyRepositoryCollection for an ontology file

OntologyScriptInitializer - Interface in org.molgenis.ontology.initializer

OntologyScriptInitializerImpl - Class in org.molgenis.ontology.initializer

OntologyScriptInitializerImpl(DataService) - Constructor for class org.molgenis.ontology.initializer.OntologyScriptInitializerImpl

OntologyServiceBatchResponse - Class in org.molgenis.ontology.response

OntologyServiceBatchResponse(String, SearchResult) - Constructor for class org.molgenis.ontology.response.OntologyServiceBatchResponse

OntologyTermHitEntity - Class in org.molgenis.ontology.sorta.bean

OntologyTermHitEntity(Entity, DefaultEntityMetaData) - Constructor for class org.molgenis.ontology.sorta.bean.OntologyTermHitEntity

OntologyTermHitEntityMetaData - Class in org.molgenis.ontology.sorta.meta

OntologyTermHitEntityMetaData() - Constructor for class org.molgenis.ontology.sorta.meta.OntologyTermHitEntityMetaData

OntologyTreeController - Class in org.molgenis.ontology.tree

OntologyTreeController() - Constructor for class org.molgenis.ontology.tree.OntologyTreeController

OntologyWord - Class in org.molgenis.ontology.roc

OntologyWord(String, String) - Constructor for class org.molgenis.ontology.roc.OntologyWord

org.molgenis.data.elasticsearch.admin - package org.molgenis.data.elasticsearch.admin

org.molgenis.ontology - package org.molgenis.ontology

org.molgenis.ontology.controller - package org.molgenis.ontology.controller

org.molgenis.ontology.importer - package org.molgenis.ontology.importer

org.molgenis.ontology.importer.repository - package org.molgenis.ontology.importer.repository

org.molgenis.ontology.initializer - package org.molgenis.ontology.initializer

org.molgenis.ontology.response - package org.molgenis.ontology.response

org.molgenis.ontology.roc - package org.molgenis.ontology.roc

org.molgenis.ontology.sorta.bean - package org.molgenis.ontology.sorta.bean

org.molgenis.ontology.sorta.job - package org.molgenis.ontology.sorta.job

org.molgenis.ontology.sorta.meta - package org.molgenis.ontology.sorta.meta

org.molgenis.ontology.sorta.repo - package org.molgenis.ontology.sorta.repo

org.molgenis.ontology.sorta.request - package org.molgenis.ontology.sorta.request

org.molgenis.ontology.sorta.service - package org.molgenis.ontology.sorta.service

org.molgenis.ontology.sorta.service.impl - package org.molgenis.ontology.sorta.service.impl

org.molgenis.ontology.tree - package org.molgenis.ontology.tree

org.molgenis.ontology.utils - package org.molgenis.ontology.utils

OWLClassContainer - Class in org.molgenis.ontology.utils

OWLClassContainer(OWLClass, String, boolean) - Constructor for class org.molgenis.ontology.utils.OWLClassContainer

P

preProcessing() - Method in class org.molgenis.ontology.utils.OntologyLoader

process() - Method in class org.molgenis.ontology.sorta.job.SortaJobProcessor

R

rebuildIndex(String) - Method in interface org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerService

Rebuilds the index for the given entity type

rebuildIndex(String) - Method in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerServiceImpl

redistributedNGramScore(String, String) - Method in class org.molgenis.ontology.roc.InformationContentService

registerOntologyRepositorySource() - Method in class org.molgenis.ontology.OntologyDataConfig

Registers the OntologyRepositorySource factory so it can be used by DataService.createFileRepositorySource(File file);

reindexType(ElasticsearchIndexManagerController.ReindexRequest) - Method in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerController

removeIllegalCharWithEmptyString(String) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

removeIllegalCharWithSingleWhiteSpace(String) - Method in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

RESULT_ENTITY - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

retrieveSortaJobResults(SortaServiceRequest, HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceController

S

SCORE - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

SCORE - Static variable in class org.molgenis.ontology.sorta.meta.OntologyTermHitEntityMetaData

search(Map<String, Object>, HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceController

setDeleteUrl(String) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

setName(String) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

setOntologyIri(String) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

setResultEntityName(String) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

setSourceEntityName(String) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

setThreshold(double) - Method in class org.molgenis.ontology.sorta.job.SortaJobExecution

SIGNIFICANT_VALUE - Static variable in class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

SortaConfiguration - Class in org.molgenis.ontology

SortaConfiguration() - Constructor for class org.molgenis.ontology.SortaConfiguration

SortaCsvRepository - Class in org.molgenis.ontology.sorta.repo

SortaCsvRepository(File) - Constructor for class org.molgenis.ontology.sorta.repo.SortaCsvRepository

SortaCsvRepository(String, String, File) - Constructor for class org.molgenis.ontology.sorta.repo.SortaCsvRepository

SortaJobExecution - Class in org.molgenis.ontology.sorta.job

SortaJobExecution(DataService) - Constructor for class org.molgenis.ontology.sorta.job.SortaJobExecution

SortaJobExecutionMetaData - Class in org.molgenis.ontology.sorta.meta

SortaJobExecutionMetaData() - Constructor for class org.molgenis.ontology.sorta.meta.SortaJobExecutionMetaData

SortaJobFactory - Class in org.molgenis.ontology.sorta.job

SortaJobFactory() - Constructor for class org.molgenis.ontology.sorta.job.SortaJobFactory

SortaJobImpl - Class in org.molgenis.ontology.sorta.job

SortaJobImpl(SortaJobProcessor, Authentication, Progress, TransactionTemplate) - Constructor for class org.molgenis.ontology.sorta.job.SortaJobImpl

SortaJobProcessor - Class in org.molgenis.ontology.sorta.job

SortaJobProcessor(String, String, String, Progress, DataService, SortaService, IdGenerator, MenuReaderService) - Constructor for class org.molgenis.ontology.sorta.job.SortaJobProcessor

SortaService - Interface in org.molgenis.ontology.sorta.service

sortaService() - Method in class org.molgenis.ontology.SortaConfiguration

SortaServiceAnonymousController - Class in org.molgenis.ontology.controller

SortaServiceAnonymousController() - Constructor for class org.molgenis.ontology.controller.SortaServiceAnonymousController

SortaServiceController - Class in org.molgenis.ontology.controller

SortaServiceController(OntologyService, SortaService, SortaJobFactory, ExecutorService, UserAccountService, FileStore, MolgenisPermissionService, DataService, LanguageService, MenuReaderService, IdGenerator, PermissionSystemService) - Constructor for class org.molgenis.ontology.controller.SortaServiceController

SortaServiceImpl - Class in org.molgenis.ontology.sorta.service.impl

SortaServiceImpl(DataService, InformationContentService) - Constructor for class org.molgenis.ontology.sorta.service.impl.SortaServiceImpl

SortaServiceRequest - Class in org.molgenis.ontology.sorta.request

SortaServiceRequest(String, String, String, boolean, EntityPager) - Constructor for class org.molgenis.ontology.sorta.request.SortaServiceRequest

SortaServiceResponse - Class in org.molgenis.ontology.sorta.request

This function is used to parse the results from OntologyService

SortaServiceResponse(String) - Constructor for class org.molgenis.ontology.sorta.request.SortaServiceResponse

SortaServiceResponse(Entity, Iterable<? extends Entity>) - Constructor for class org.molgenis.ontology.sorta.request.SortaServiceResponse

SortaServiceResponse(Map<String, Object>, List<Map<String, Object>>) - Constructor for class org.molgenis.ontology.sorta.request.SortaServiceResponse

SortaServiceUtil - Class in org.molgenis.ontology.utils

SortaServiceUtil() - Constructor for class org.molgenis.ontology.utils.SortaServiceUtil

SOURCE_ENTITY - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

T

termFrequencyService() - Method in class org.molgenis.ontology.SortaConfiguration

THRESHOLD - Static variable in class org.molgenis.ontology.sorta.job.SortaJobExecution

U

unzip(File) - Static method in class org.molgenis.ontology.utils.ZipFileUtil

updateThreshold(String, String, Model) - Method in class org.molgenis.ontology.controller.SortaServiceController

upload(String, Part, HttpServletRequest, Model) - Method in class org.molgenis.ontology.controller.SortaServiceAnonymousController

upload(String, String, Part, Model, HttpServletRequest) - Method in class org.molgenis.ontology.controller.SortaServiceController

URI - Static variable in class org.molgenis.data.elasticsearch.admin.ElasticsearchIndexManagerController

URI - Static variable in class org.molgenis.ontology.controller.OntologyManagerController

URI - Static variable in class org.molgenis.ontology.controller.SortaServiceAnonymousController

URI - Static variable in class org.molgenis.ontology.controller.SortaServiceController

URI - Static variable in class org.molgenis.ontology.tree.OntologyTreeController

V

VALIDATED - Static variable in class org.molgenis.ontology.sorta.meta.MatchingTaskContentEntityMetaData

validateImport(File, RepositoryCollection) - Method in class org.molgenis.ontology.importer.OntologyImportService

VIEW_NAME - Static variable in class org.molgenis.ontology.controller.SortaServiceAnonymousController

VIEW_ONTOLOGY_MANAGER - Static variable in class org.molgenis.ontology.controller.OntologyManagerController

Z

ZipFileUtil - Class in org.molgenis.ontology.utils

ZipFileUtil() - Constructor for class org.molgenis.ontology.utils.ZipFileUtil

A C D E F G H I L M N O P R S T U V Z