org.molgenis.ontology.importer.repository

Class OntologyRepositoryCollection

java.lang.Object

org.molgenis.data.support.AbstractRepositoryCollection

org.molgenis.data.support.FileRepositoryCollection

org.molgenis.ontology.importer.repository.OntologyRepositoryCollection

All Implemented Interfaces:

Iterable<Repository<Entity>>, RepositoryCollection

public class OntologyRepositoryCollection
extends FileRepositoryCollection

RepositoryCollection for the import of an owl file.

Reads the owl file's contents using an OntologyLoader. Fills InMemoryRepositorys with their contents.

Field Summary

Fields inherited from class org.molgenis.data.support.FileRepositoryCollection

cellProcessors

Constructor Summary

Constructors

Constructor and Description
OntologyRepositoryCollection(File file) Creates a new OntologyRepositoryCollection for an ontology file

Method Summary

Modifier and Type	Method and Description
Iterable<String>	getEntityNames()
String	getName()
Repository<Entity>	getRepository(String name)
boolean	hasRepository(EntityType entityType)
boolean	hasRepository(String name)
void	init()
Iterator<Repository<Entity>>	iterator()

Methods inherited from class org.molgenis.data.support.FileRepositoryCollection

addCellProcessor, getFileNameExtensions

Methods inherited from class org.molgenis.data.support.AbstractRepositoryCollection

addAttribute, createRepository, deleteAttribute, deleteRepository, getCapabilities, getRepository, updateAttribute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.RepositoryCollection

stream

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

OntologyRepositoryCollection

public OntologyRepositoryCollection(File file)

Creates a new OntologyRepositoryCollection for an ontology file

Parameters:

file - the ontology file

Method Detail

init

public void init()
          throws IOException

Specified by:

init in class FileRepositoryCollection

Throws:

IOException

getEntityNames

public Iterable<String> getEntityNames()

getName

public String getName()

iterator

public Iterator<Repository<Entity>> iterator()

getRepository

public Repository<Entity> getRepository(String name)

hasRepository

public boolean hasRepository(String name)

hasRepository

public boolean hasRepository(EntityType entityType)