org.molgenis.ontology.sorta.service

Interface SortaService

All Known Implementing Classes:

SortaServiceImpl

public interface SortaService

Method Summary

Modifier and Type	Method and Description
Iterable<Entity>	findOntologyTermEntities(String ontologyIri, Entity inputEntity) Find a list of relevant ontologyterm typed entities using lexical matching (elasticsearch + ngram) in generic type based on given ontologyIri and a set of query inputs (name, synonym, ontology database id, e.g.
Iterable<Entity>	getAllOntologyEntities() Get all ontology entities in generic type
Entity	getOntologyEntity(String ontologyIri) Get a specified ontology entity in generic type based on the given ontologyIri
Entity	getOntologyTermEntity(String ontologyTermIri, String ontologyIri) Get a specified ontologyterm in generic type based on the given ontologyIri and ontologyTermIri

Method Detail

getAllOntologyEntities

Iterable<Entity> getAllOntologyEntities()

Get all ontology entities in generic type

Returns:

list of untyped ontology entities

getOntologyEntity

Entity getOntologyEntity(String ontologyIri)

Get a specified ontology entity in generic type based on the given ontologyIri

Returns:

specified ontology entity in generic type

getOntologyTermEntity

Entity getOntologyTermEntity(String ontologyTermIri,
                             String ontologyIri)

Get a specified ontologyterm in generic type based on the given ontologyIri and ontologyTermIri

Returns:

specifieid ontologyterm entity in a generic type

findOntologyTermEntities

Iterable<Entity> findOntologyTermEntities(String ontologyIri,
                                          Entity inputEntity)

Find a list of relevant ontologyterm typed entities using lexical matching (elasticsearch + ngram) in generic type based on given ontologyIri and a set of query inputs (name, synonym, ontology database id, e.g. hpo, omim)

Returns:

a list of ontologyterm entities in generic type