Package org.molgenis.ontology.sorta.repo

Class SortaCsvRepository

  • All Implemented Interfaces:
    java.io.Closeable, java.lang.AutoCloseable, java.lang.Iterable<org.molgenis.data.Entity>, org.molgenis.data.Repository<org.molgenis.data.Entity>
    public class SortaCsvRepository
extends org.molgenis.data.support.AbstractRepository

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static java.lang.String ALLOWED_IDENTIFIER  

    • Constructor Summary

      Constructors 
      Constructor Description
      SortaCsvRepository​(java.io.File file, org.molgenis.data.meta.model.EntityTypeFactory entityTypeFactory, org.molgenis.data.meta.model.AttributeFactory attrMetaFactory)  
      SortaCsvRepository​(java.lang.String entityTypeId, java.lang.String entityLabel, java.io.File uploadedFile, org.molgenis.data.meta.model.EntityTypeFactory entityTypeFactory, org.molgenis.data.meta.model.AttributeFactory attrMetaFactory)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      long count()  
      java.util.Set<org.molgenis.data.RepositoryCapability> getCapabilities()  
      org.molgenis.data.meta.model.EntityType getEntityType()  
      java.util.Iterator<org.molgenis.data.Entity> iterator()  

      • Methods inherited from class org.molgenis.data.support.AbstractRepository

        add, add, aggregate, close, count, delete, delete, deleteAll, deleteAll, deleteById, findAll, findAll, findAll, findOne, findOneById, findOneById, forEachBatched, getName, getQueryOperators, query, update, update

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator

      • Methods inherited from interface org.molgenis.data.Repository

        forEachBatched, getExistingIDs, upsertBatch

    • Field Detail

      • ALLOWED_IDENTIFIER

        public static final java.lang.String ALLOWED_IDENTIFIER
        See Also:
        Constant Field Values

    • Constructor Detail

      • SortaCsvRepository

        public SortaCsvRepository​(java.io.File file,
                          org.molgenis.data.meta.model.EntityTypeFactory entityTypeFactory,
                          org.molgenis.data.meta.model.AttributeFactory attrMetaFactory)

      • SortaCsvRepository

        public SortaCsvRepository​(java.lang.String entityTypeId,
                          java.lang.String entityLabel,
                          java.io.File uploadedFile,
                          org.molgenis.data.meta.model.EntityTypeFactory entityTypeFactory,
                          org.molgenis.data.meta.model.AttributeFactory attrMetaFactory)

    • Method Detail

      • getEntityType

        public org.molgenis.data.meta.model.EntityType getEntityType()

      • iterator

        public java.util.Iterator<org.molgenis.data.Entity> iterator()

      • getCapabilities

        public java.util.Set<org.molgenis.data.RepositoryCapability> getCapabilities()

      • count

        public long count()
        Specified by:
        count in interface org.molgenis.data.Repository<org.molgenis.data.Entity>
        Overrides:
        count in class org.molgenis.data.support.AbstractRepository