Package org.molgenis.ontology.sorta.service

Interface SortaService

  • All Known Implementing Classes:
    SortaServiceImpl
    public interface SortaService

    • Method Detail

      • getAllOntologyEntities

        Iterable<Entity> getAllOntologyEntities()
        Get all ontology entities in generic type
        Returns:
        list of untyped ontology entities

      • getOntologyEntity

        Entity getOntologyEntity​(String ontologyIri)
        Get a specified ontology entity in generic type based on the given ontologyIri
        Returns:
        specified ontology entity in generic type

      • getOntologyTermEntity

        Entity getOntologyTermEntity​(String ontologyTermIri,
                             String ontologyIri)
        Get a specified ontologyterm in generic type based on the given ontologyIri and ontologyTermIri
        Returns:
        specifieid ontologyterm entity in a generic type

      • findOntologyTermEntities

        Iterable<Entity> findOntologyTermEntities​(String ontologyIri,
                                          Entity inputEntity)
        Find a list of relevant ontologyterm typed entities using lexical matching (elasticsearch + ngram) in generic type based on given ontologyIri and a set of query inputs (name, synonym, ontology database id, e.g. hpo, omim)
        Returns:
        a list of ontologyterm entities in generic type