org.molgenis.r

Class RScriptExecutor

java.lang.Object

org.molgenis.r.RScriptExecutor

@Service
public class RScriptExecutor
extends Object

Executes a r script with the RScript executable in a new process.

Constructor Summary

Constructors

Constructor and Description
RScriptExecutor(String rScriptExecutable, String rLibs)

Method Summary

Modifier and Type	Method and Description
void	executeScript(File script, ROutputHandler outputHandler) Execute a r script and wait for it to finish

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RScriptExecutor

@Autowired
public RScriptExecutor(@Value(value="${r_script_executable:/usr/bin/Rscript}")
                                  String rScriptExecutable,
                                  @Value(value="${r_libs:@null}")
                                  String rLibs)

Method Detail

executeScript

public void executeScript(File script,
                          ROutputHandler outputHandler)

Execute a r script and wait for it to finish