org.molgenis.r

Class RScriptRunner

java.lang.Object

org.molgenis.r.RScriptRunner

All Implemented Interfaces:

ScriptRunner

@Service
public class RScriptRunner
extends Object
implements ScriptRunner

Constructor Summary

Constructors

Constructor and Description
RScriptRunner(RScriptExecutor rScriptExecutor, FileStore fileStore, org.springframework.web.servlet.view.freemarker.FreeMarkerConfigurer freeMarkerConfig)

Method Summary

Modifier and Type	Method and Description
void	runRScript(File script, ROutputHandler outputHandler) Run an R script
void	runRScript(String templateName, Map<String,Object> parameters, ROutputHandler outputHandler) Run an R script as freemarker template
void	runRScript(String script, ROutputHandler outputHandler) Run an R script as string
void	runRScript(String scriptName, String templateName, Map<String,Object> parameters, ROutputHandler outputHandler) Run an R script as freemarker template
String	runScript(Script script, Map<String,Object> parameters)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RScriptRunner

@Autowired
public RScriptRunner(RScriptExecutor rScriptExecutor,
                                FileStore fileStore,
                                org.springframework.web.servlet.view.freemarker.FreeMarkerConfigurer freeMarkerConfig)

Method Detail

runRScript

public void runRScript(String templateName,
                       Map<String,Object> parameters,
                       ROutputHandler outputHandler)
                throws IOException,
                       freemarker.template.TemplateException

Run an R script as freemarker template

Parameters:

scriptName -

template -

parameters -

Throws:

IOException

freemarker.template.TemplateException

runRScript

public void runRScript(String scriptName,
                       String templateName,
                       Map<String,Object> parameters,
                       ROutputHandler outputHandler)
                throws IOException,
                       freemarker.template.TemplateException

Run an R script as freemarker template

Parameters:

scriptName -

template -

parameters -

Throws:

IOException

freemarker.template.TemplateException

runRScript

public void runRScript(String script,
                       ROutputHandler outputHandler)
                throws FileNotFoundException,
                       IOException

Run an R script as string

Parameters:

script -

outputHandler -

Throws:

IOException

FileNotFoundException

runScript

public String runScript(Script script,
                        Map<String,Object> parameters)

Specified by:

runScript in interface ScriptRunner

runRScript

public void runRScript(File script,
                       ROutputHandler outputHandler)

Run an R script

Parameters:

script -

outputHandler -