A C D E F G H I J K L M N O P R S T U V W

A

AccountController - Class in org.molgenis.security.account

AccountController() - Constructor for class org.molgenis.security.account.AccountController

AccountService - Class in org.molgenis.security.account

AccountService() - Constructor for class org.molgenis.security.account.AccountService

activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController

activateUser(String) - Method in class org.molgenis.security.account.AccountService

Activate a registered user

ACTIVATIONCODE - Static variable in class org.molgenis.omx.auth.MolgenisUser

ACTIVE - Static variable in class org.molgenis.omx.auth.MolgenisUser

addGroupPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addHierarchyPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

ADDRESS - Static variable in class org.molgenis.omx.auth.MolgenisUser

addUserPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addUserToGroup(Integer) - Method in class org.molgenis.security.usermanager.UserManagerController

addUserToGroup(Integer, Integer) - Method in interface org.molgenis.security.usermanager.UserManagerService

addUserToGroup(Integer, Integer) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

AFFILIATION - Static variable in class org.molgenis.omx.auth.MolgenisUser

afterPropertiesSet() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

ALL_USER_GROUP - Static variable in class org.molgenis.security.account.AccountService

anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

Authority - Interface in org.molgenis.omx.auth

Authority: .

C

CaptchaController - Class in org.molgenis.security.captcha

CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController

CaptchaException - Exception in org.molgenis.security.captcha

CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException

CaptchaRequest - Class in org.molgenis.security.captcha

CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest

CaptchaService - Class in org.molgenis.security.captcha

CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService

check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker

CITY - Static variable in class org.molgenis.omx.auth.MolgenisUser

configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

COUNTRY - Static variable in class org.molgenis.omx.auth.MolgenisUser

createAnonymousUserAuthorities() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

createAuthentication(HttpServletRequest) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService

createUser(MolgenisUser, String) - Method in class org.molgenis.security.account.AccountService

D

DEPARTMENT - Static variable in class org.molgenis.omx.auth.MolgenisUser

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

E

EMAIL - Static variable in class org.molgenis.omx.auth.MolgenisUser

ENTITY_NAME - Static variable in class org.molgenis.omx.auth.GroupAuthority

ENTITY_NAME - Static variable in class org.molgenis.omx.auth.MolgenisGroup

ENTITY_NAME - Static variable in class org.molgenis.omx.auth.MolgenisGroupMember

ENTITY_NAME - Static variable in class org.molgenis.omx.auth.MolgenisUser

ENTITY_NAME - Static variable in class org.molgenis.omx.auth.UserAuthority

equals(Object) - Method in class org.molgenis.omx.auth.GroupAuthority

equals(Object) - Method in class org.molgenis.omx.auth.MolgenisGroup

equals(Object) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

equals(Object) - Method in class org.molgenis.omx.auth.MolgenisUser

equals(Object) - Method in class org.molgenis.omx.auth.UserAuthority

equals(Object) - Method in class org.molgenis.security.permission.Permission

F

FAX - Static variable in class org.molgenis.omx.auth.MolgenisUser

FIRSTNAME - Static variable in class org.molgenis.omx.auth.MolgenisUser

G

get(String) - Method in class org.molgenis.omx.auth.GroupAuthority

Generic getter.

get(String) - Method in class org.molgenis.omx.auth.MolgenisGroup

Generic getter.

get(String) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Generic getter.

get(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Generic getter.

get(String) - Method in class org.molgenis.omx.auth.UserAuthority

Generic getter.

getActivationCode() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Used as alternative authentication mechanism to verify user email and/or if user has lost password..

getActivationMode() - Method in class org.molgenis.security.account.AccountService

getActive() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Boolean to indicate if this account can be used to login.

getAddress() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the The address of the Contact..

getAffiliation() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getAllMolgenisGroups() - Method in interface org.molgenis.security.usermanager.UserManagerService

getAllMolgenisGroups() - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getAllMolgenisUsers() - Method in interface org.molgenis.security.usermanager.UserManagerService

getAllMolgenisUsers() - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getAttributeNames() - Method in class org.molgenis.omx.auth.GroupAuthority

getAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisGroup

getAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

getAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisUser

getAttributeNames() - Method in class org.molgenis.omx.auth.UserAuthority

getAuthorities() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest

getCity() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getCountry() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getCredentials() - Method in class org.molgenis.security.runas.SystemSecurityToken

getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService

Returns the currently logged in user

getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl

getDepartment() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getEmail() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the The email address of the Contact..

getEntityClassIds() - Method in interface org.molgenis.security.permission.PermissionManagerService

getEntityClassIds() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getEntityIds() - Method in class org.molgenis.security.permission.Permissions

getEntityMetaData() - Method in class org.molgenis.omx.auth.GroupAuthority

getEntityMetaData() - Method in class org.molgenis.omx.auth.MolgenisGroup

getEntityMetaData() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

getEntityMetaData() - Method in class org.molgenis.omx.auth.MolgenisUser

getEntityMetaData() - Method in class org.molgenis.omx.auth.UserAuthority

getEntityName() - Method in class org.molgenis.omx.auth.GroupAuthority

getEntityName() - Method in class org.molgenis.omx.auth.MolgenisGroup

getEntityName() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

getEntityName() - Method in class org.molgenis.omx.auth.MolgenisUser

getEntityName() - Method in class org.molgenis.omx.auth.UserAuthority

getFax() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the The fax number of the Contact..

getFirstName() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getGroup() - Method in class org.molgenis.security.permission.Permission

getGroupEntityClassPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerController

getGroupEntityClassPermissions(Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupEntityClassPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroupId() - Method in class org.molgenis.security.permission.Permissions

getGroupPermissions() - Method in class org.molgenis.security.permission.Permissions

getGroupPluginPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerController

getGroupPluginPermissions(Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupPluginPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroups() - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroups() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroupsWhereUserIsMember(Integer) - Method in interface org.molgenis.security.usermanager.UserManagerService

getGroupsWhereUserIsMember(Integer) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getGroupsWhereUserIsNotMember(Integer) - Method in interface org.molgenis.security.usermanager.UserManagerService

getGroupsWhereUserIsNotMember(Integer) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getHierarchyPermissionMap() - Method in class org.molgenis.security.permission.Permissions

getId() - Method in class org.molgenis.omx.auth.GroupAuthority

Get the .

getId() - Method in class org.molgenis.omx.auth.MolgenisGroup

Get the .

getId() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Get the .

getId() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the automatically generated internal id, only for internal use..

getId() - Method in class org.molgenis.omx.auth.UserAuthority

Get the .

getId() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

getIdValue() - Method in class org.molgenis.omx.auth.GroupAuthority

getIdValue() - Method in class org.molgenis.omx.auth.MolgenisGroup

getIdValue() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

getIdValue() - Method in class org.molgenis.omx.auth.MolgenisUser

getIdValue() - Method in class org.molgenis.omx.auth.UserAuthority

getLabelAttributeNames() - Method in class org.molgenis.omx.auth.GroupAuthority

getLabelAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisGroup

getLabelAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

getLabelAttributeNames() - Method in class org.molgenis.omx.auth.MolgenisUser

getLabelAttributeNames() - Method in class org.molgenis.omx.auth.UserAuthority

getLastName() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getLoginErrorPage(Model) - Method in class org.molgenis.security.login.MolgenisLoginController

getLoginForm() - Method in class org.molgenis.security.account.AccountController

getLoginPage() - Method in class org.molgenis.security.login.MolgenisLoginController

getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException

getMidInitials() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getMolgenisGroup() - Method in class org.molgenis.omx.auth.GroupAuthority

Get the .

getMolgenisGroup() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Get the .

getMolgenisUser() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Get the .

getMolgenisUser() - Method in class org.molgenis.omx.auth.UserAuthority

Get the .

getName() - Method in class org.molgenis.omx.auth.MolgenisGroup

Get the .

getPassword() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the big fixme: password type.

getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController

getPhone() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the The telephone number of the Contact including the suitable area codes..

getPlugins() - Method in interface org.molgenis.security.permission.PermissionManagerService

getPlugins() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getPrincipal() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getPrincipal() - Method in class org.molgenis.security.runas.SystemSecurityToken

getRegisterForm() - Method in class org.molgenis.security.account.AccountController

getRole() - Method in interface org.molgenis.omx.auth.Authority

getRole() - Method in class org.molgenis.omx.auth.GroupAuthority

Get the .

getRole() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the Indicate role of the contact, e.g.

getRole() - Method in class org.molgenis.omx.auth.UserAuthority

Get the .

getSuEmailAddresses() - Method in interface org.molgenis.security.user.MolgenisUserService

Returns e-mail addresses of super users

getSuEmailAddresses() - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

getSuperuser() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getTitle() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the An academic title, e.g.

getTollFreePhone() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the A toll free phone number for the Contact, including suitable area codes..

getType() - Method in class org.molgenis.security.permission.Permission

getUser(String) - Method in interface org.molgenis.security.user.MolgenisUserService

Returns the currently logged in user

getUser(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

getUserEntityClassPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerController

getUserEntityClassPermissions(Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserEntityClassPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUserId() - Method in class org.molgenis.security.permission.Permissions

getUsername() - Method in class org.molgenis.omx.auth.MolgenisUser

Get the .

getUsername() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

getUserPermissions() - Method in class org.molgenis.security.permission.Permissions

getUserPluginPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerController

getUserPluginPermissions(Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserPluginPermissions(Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUsers() - Method in interface org.molgenis.security.permission.PermissionManagerService

getUsers() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUsersMemberInGroup(Integer, Model) - Method in class org.molgenis.security.usermanager.UserManagerController

getUsersMemberInGroup(Integer) - Method in interface org.molgenis.security.usermanager.UserManagerService

getUsersMemberInGroup(Integer) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

GroupAuthority - Class in org.molgenis.omx.auth

GroupAuthority: .

GroupAuthority() - Constructor for class org.molgenis.omx.auth.GroupAuthority

GroupAuthorityMetaData - Class in org.molgenis.omx.auth

GroupAuthorityMetaData() - Constructor for class org.molgenis.omx.auth.GroupAuthorityMetaData

GroupAuthorityRepository - Class in org.molgenis.omx.auth

GroupAuthorityRepository(EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.GroupAuthorityRepository

GroupAuthorityRepository(EntityManager, EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.GroupAuthorityRepository

For testing purposes

H

handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController

handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController

handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController

handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.permission.PermissionManagerController

hashCode() - Method in class org.molgenis.omx.auth.GroupAuthority

hashCode() - Method in class org.molgenis.omx.auth.MolgenisGroup

hashCode() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

hashCode() - Method in class org.molgenis.omx.auth.MolgenisUser

hashCode() - Method in class org.molgenis.omx.auth.UserAuthority

hashCode() - Method in class org.molgenis.security.permission.Permission

hasPermissionOnEntity(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl

hasPermissionOnPlugin(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl

I

ID - Static variable in class org.molgenis.omx.auth.GroupAuthority

ID - Static variable in class org.molgenis.omx.auth.MolgenisGroup

ID - Static variable in class org.molgenis.omx.auth.MolgenisGroupMember

ID - Static variable in class org.molgenis.omx.auth.MolgenisUser

ID - Static variable in class org.molgenis.omx.auth.UserAuthority

ID - Static variable in class org.molgenis.security.user.UserAccountController

init(Model) - Method in class org.molgenis.security.permission.PermissionManagerController

init(Model) - Method in class org.molgenis.security.usermanager.UserManagerController

invoke(MethodInvocation) - Method in class org.molgenis.security.runas.RunAsSystemProxy

J

JDBCMetaDatabase - Class in org.molgenis

This class is an in memory representation of the contents of your *_db.xml file Utility of this class is to allow for dynamic querying and/or user interfacing for example within a query tool or a security module.

JDBCMetaDatabase() - Constructor for class org.molgenis.JDBCMetaDatabase

K

KEY_PLUGIN_AUTH_ACTIVATIONMODE - Static variable in class org.molgenis.security.account.AccountService

L

LASTNAME - Static variable in class org.molgenis.omx.auth.MolgenisUser

loadUserByUsername(String) - Method in class org.molgenis.security.user.MolgenisUserDetailsService

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker

MIDINITIALS - Static variable in class org.molgenis.omx.auth.MolgenisUser

MIN_PASSWORD_LENGTH - Static variable in class org.molgenis.security.user.UserAccountController

MolgenisAnonymousAuthenticationFilter - Class in org.molgenis.security

Based on org.springframework.security.web.authentication.AnonymousAuthenticationFilter: Detects if there is no Authentication object in the SecurityContextHolder, and populates it with one if needed.

MolgenisAnonymousAuthenticationFilter(String, Object, UserDetailsService) - Constructor for class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

Creates a filter with a principal named "anonymousUser" and the single authority "ROLE_ANONYMOUS".

MOLGENISGROUP - Static variable in class org.molgenis.omx.auth.GroupAuthority

MolgenisGroup - Class in org.molgenis.omx.auth

MolgenisGroup: .

MolgenisGroup() - Constructor for class org.molgenis.omx.auth.MolgenisGroup

MOLGENISGROUP - Static variable in class org.molgenis.omx.auth.MolgenisGroupMember

MolgenisGroupMember - Class in org.molgenis.omx.auth

MolgenisGroupMember: .

MolgenisGroupMember() - Constructor for class org.molgenis.omx.auth.MolgenisGroupMember

MolgenisGroupMemberMetaData - Class in org.molgenis.omx.auth

MolgenisGroupMemberMetaData() - Constructor for class org.molgenis.omx.auth.MolgenisGroupMemberMetaData

MolgenisGroupMemberRepository - Class in org.molgenis.omx.auth

MolgenisGroupMemberRepository(EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisGroupMemberRepository

MolgenisGroupMemberRepository(EntityManager, EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisGroupMemberRepository

For testing purposes

MolgenisGroupMetaData - Class in org.molgenis.omx.auth

MolgenisGroupMetaData() - Constructor for class org.molgenis.omx.auth.MolgenisGroupMetaData

MolgenisGroupRepository - Class in org.molgenis.omx.auth

MolgenisGroupRepository(EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisGroupRepository

MolgenisGroupRepository(EntityManager, EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisGroupRepository

For testing purposes

MolgenisLoginController - Class in org.molgenis.security.login

MolgenisLoginController() - Constructor for class org.molgenis.security.login.MolgenisLoginController

molgenisPermissionService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

MolgenisPermissionServiceImpl - Class in org.molgenis.security.permission

MolgenisPermissionServiceImpl() - Constructor for class org.molgenis.security.permission.MolgenisPermissionServiceImpl

MOLGENISUSER - Static variable in class org.molgenis.omx.auth.MolgenisGroupMember

MolgenisUser - Class in org.molgenis.omx.auth

MolgenisUser: Anyone who can login.

MolgenisUser() - Constructor for class org.molgenis.omx.auth.MolgenisUser

MOLGENISUSER - Static variable in class org.molgenis.omx.auth.UserAuthority

MolgenisUserDetailsChecker - Class in org.molgenis.security.user

Checks user details during the authentication process

MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker

MolgenisUserDetailsService - Class in org.molgenis.security.user

MolgenisUserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.MolgenisUserDetailsService

MolgenisUserException - Exception in org.molgenis.security.user

MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException

MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException

MolgenisUserMetaData - Class in org.molgenis.omx.auth

MolgenisUserMetaData() - Constructor for class org.molgenis.omx.auth.MolgenisUserMetaData

MolgenisUserRepository - Class in org.molgenis.omx.auth

MolgenisUserRepository(EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisUserRepository

MolgenisUserRepository(EntityManager, EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.MolgenisUserRepository

For testing purposes

MolgenisUserService - Interface in org.molgenis.security.user

MolgenisUserServiceImpl - Class in org.molgenis.security.user

Manage user in groups

MolgenisUserServiceImpl(DataService) - Constructor for class org.molgenis.security.user.MolgenisUserServiceImpl

MolgenisUserViewData - Class in org.molgenis.security.usermanager

MolgenisWebAppSecurityConfig - Class in org.molgenis.security

MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig

N

NAME - Static variable in class org.molgenis.omx.auth.MolgenisGroup

O

org.molgenis - package org.molgenis

org.molgenis.omx.auth - package org.molgenis.omx.auth

org.molgenis.security - package org.molgenis.security

org.molgenis.security.account - package org.molgenis.security.account

org.molgenis.security.captcha - package org.molgenis.security.captcha

org.molgenis.security.login - package org.molgenis.security.login

org.molgenis.security.permission - package org.molgenis.security.permission

org.molgenis.security.runas - package org.molgenis.security.runas

org.molgenis.security.user - package org.molgenis.security.user

org.molgenis.security.usermanager - package org.molgenis.security.usermanager

P

PASSWORD_ - Static variable in class org.molgenis.omx.auth.MolgenisUser

passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

Permission - Class in org.molgenis.security.permission

Permission() - Constructor for class org.molgenis.security.permission.Permission

PermissionManagerController - Class in org.molgenis.security.permission

PermissionManagerController(PermissionManagerService) - Constructor for class org.molgenis.security.permission.PermissionManagerController

PermissionManagerService - Interface in org.molgenis.security.permission

Manage user and group permissions for plugins and entity classes

PermissionManagerServiceImpl - Class in org.molgenis.security.permission

PermissionManagerServiceImpl(DataService, MolgenisPluginRegistry, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.permission.PermissionManagerServiceImpl

Permissions - Class in org.molgenis.security.permission

Permissions() - Constructor for class org.molgenis.security.permission.Permissions

PHONE - Static variable in class org.molgenis.omx.auth.MolgenisUser

postProcessAfterInitialization(Object, String) - Method in class org.molgenis.security.runas.RunAsSystemBeanPostProcessor

postProcessBeforeInitialization(Object, String) - Method in class org.molgenis.security.runas.RunAsSystemBeanPostProcessor

R

registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController

removeUserFromGroup(Integer) - Method in class org.molgenis.security.usermanager.UserManagerController

removeUserFromGroup(Integer, Integer) - Method in interface org.molgenis.security.usermanager.UserManagerService

removeUserFromGroup(Integer, Integer) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

replaceGroupEntityClassPermissions(List<GroupAuthority>, Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupEntityClassPermissions(List<GroupAuthority>, Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceGroupPluginPermissions(List<GroupAuthority>, Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupPluginPermissions(List<GroupAuthority>, Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserEntityClassPermissions(List<UserAuthority>, Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserEntityClassPermissions(List<UserAuthority>, Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserPluginPermissions(List<UserAuthority>, Integer) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserPluginPermissions(List<UserAuthority>, Integer) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController

resetPassword(String) - Method in class org.molgenis.security.account.AccountService

ROLE - Static variable in class org.molgenis.omx.auth.GroupAuthority

ROLE - Static variable in class org.molgenis.omx.auth.MolgenisUser

ROLE - Static variable in class org.molgenis.omx.auth.UserAuthority

roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

RunAsSystem - Annotation Type in org.molgenis.security.runas

If a method is annotated with this annotation it is run with role 'ROLE_SYSTEM' The current security context will be replaced with one that contains a SystemSecurityToken

RunAsSystemBeanPostProcessor - Class in org.molgenis.security.runas

Proxies class that have the RunAsSystem annotation on one of its methods

RunAsSystemBeanPostProcessor() - Constructor for class org.molgenis.security.runas.RunAsSystemBeanPostProcessor

RunAsSystemProxy - Class in org.molgenis.security.runas

Proxy that set a SystemSecurityToken in the security context for the duration of a method

RunAsSystemProxy(Object) - Constructor for class org.molgenis.security.runas.RunAsSystemProxy

S

set(Entity, boolean) - Method in class org.molgenis.omx.auth.GroupAuthority

set(String, Object) - Method in class org.molgenis.omx.auth.GroupAuthority

set(Entity, boolean) - Method in class org.molgenis.omx.auth.MolgenisGroup

set(String, Object) - Method in class org.molgenis.omx.auth.MolgenisGroup

set(Entity, boolean) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

set(String, Object) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

set(Entity, boolean) - Method in class org.molgenis.omx.auth.MolgenisUser

set(String, Object) - Method in class org.molgenis.omx.auth.MolgenisUser

set(Entity, boolean) - Method in class org.molgenis.omx.auth.UserAuthority

set(String, Object) - Method in class org.molgenis.omx.auth.UserAuthority

setActivationCode(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Used as alternative authentication mechanism to verify user email and/or if user has lost password..

setActive(Boolean) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Boolean to indicate if this account can be used to login.

setAddress(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the The address of the Contact..

setAffiliation(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

setAuthenticationDetailsSource(AuthenticationDetailsSource<HttpServletRequest, ?>) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest

setCity(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setCountry(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setDepartment(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setEmail(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the The email address of the Contact..

setEntityIds(Map<String, String>) - Method in class org.molgenis.security.permission.Permissions

setFax(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the The fax number of the Contact..

setFirstName(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

setGroup(String) - Method in class org.molgenis.security.permission.Permission

setGroupId(Integer) - Method in class org.molgenis.security.permission.Permissions

setId(Integer) - Method in class org.molgenis.omx.auth.GroupAuthority

Set the .

setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisGroup

Set the .

setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Set the .

setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the automatically generated internal id, only for internal use..

setId(Integer) - Method in class org.molgenis.omx.auth.UserAuthority

Set the .

setLastName(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

setMidInitials(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.omx.auth.GroupAuthority

Set the .

setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Set the .

setMolgenisUser(MolgenisUser) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

Set the .

setMolgenisUser(MolgenisUser) - Method in class org.molgenis.omx.auth.UserAuthority

Set the .

setName(String) - Method in class org.molgenis.omx.auth.MolgenisGroup

Set the .

setPassword(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the big fixme: password type.

setPhone(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the The telephone number of the Contact including the suitable area codes..

setRole(String) - Method in interface org.molgenis.omx.auth.Authority

setRole(String) - Method in class org.molgenis.omx.auth.GroupAuthority

Set the .

setRole(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the Indicate role of the contact, e.g.

setRole(String) - Method in class org.molgenis.omx.auth.UserAuthority

Set the .

setSuperuser(Boolean) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

setTitle(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the An academic title, e.g.

setTollFreePhone(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the A toll free phone number for the Contact, including suitable area codes..

setType(String) - Method in class org.molgenis.security.permission.Permission

setUserId(Integer) - Method in class org.molgenis.security.permission.Permissions

setUsername(String) - Method in class org.molgenis.omx.auth.MolgenisUser

Set the .

showAccount(Model) - Method in class org.molgenis.security.user.UserAccountController

sort() - Method in class org.molgenis.security.permission.Permissions

SUPERUSER - Static variable in class org.molgenis.omx.auth.MolgenisUser

SystemSecurityToken - Class in org.molgenis.security.runas

Authentication token for the SYSTEM user

SystemSecurityToken() - Constructor for class org.molgenis.security.runas.SystemSecurityToken

T

TITLE - Static variable in class org.molgenis.omx.auth.MolgenisUser

TOLLFREEPHONE - Static variable in class org.molgenis.omx.auth.MolgenisUser

toString() - Method in class org.molgenis.omx.auth.GroupAuthority

toString(boolean) - Method in class org.molgenis.omx.auth.GroupAuthority

toString() - Method in class org.molgenis.omx.auth.MolgenisGroup

toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisGroup

toString() - Method in class org.molgenis.omx.auth.MolgenisGroupMember

toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisGroupMember

toString() - Method in class org.molgenis.omx.auth.MolgenisUser

toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisUser

toString() - Method in class org.molgenis.omx.auth.UserAuthority

toString(boolean) - Method in class org.molgenis.omx.auth.UserAuthority

toString() - Method in class org.molgenis.security.permission.Permission

U

update(MolgenisUser) - Method in interface org.molgenis.security.user.MolgenisUserService

Update user

update(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

updateAccount(UserAccountController.AccountUpdateRequest) - Method in class org.molgenis.security.user.UserAccountController

updateCurrentUser(MolgenisUser) - Method in interface org.molgenis.security.user.UserAccountService

Update the currently logged in user

updateCurrentUser(MolgenisUser) - Method in class org.molgenis.security.user.UserAccountServiceImpl

updateGroupEntityClassPermissions(Integer, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateGroupPluginPermissions(Integer, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateUserEntityClassPermissions(Integer, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateUserPluginPermissions(Integer, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateView(Integer, Integer, Model) - Method in class org.molgenis.security.usermanager.UserManagerController

URI - Static variable in class org.molgenis.security.account.AccountController

URI - Static variable in class org.molgenis.security.permission.PermissionManagerController

URI - Static variable in class org.molgenis.security.user.UserAccountController

URI - Static variable in class org.molgenis.security.usermanager.UserManagerController

UserAccountController - Class in org.molgenis.security.user

UserAccountController(UserAccountService) - Constructor for class org.molgenis.security.user.UserAccountController

UserAccountService - Interface in org.molgenis.security.user

Manage account of the current user

UserAccountServiceImpl - Class in org.molgenis.security.user

UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl

UserAuthority - Class in org.molgenis.omx.auth

UserAuthority: .

UserAuthority() - Constructor for class org.molgenis.omx.auth.UserAuthority

UserAuthorityMetaData - Class in org.molgenis.omx.auth

UserAuthorityMetaData() - Constructor for class org.molgenis.omx.auth.UserAuthorityMetaData

UserAuthorityRepository - Class in org.molgenis.omx.auth

UserAuthorityRepository(EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.UserAuthorityRepository

UserAuthorityRepository(EntityManager, EntityValidator, QueryResolver) - Constructor for class org.molgenis.omx.auth.UserAuthorityRepository

For testing purposes

userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

UserManagerController - Class in org.molgenis.security.usermanager

UserManagerController(UserManagerService) - Constructor for class org.molgenis.security.usermanager.UserManagerController

UserManagerService - Interface in org.molgenis.security.usermanager

UserManagerServiceImpl - Class in org.molgenis.security.usermanager

Manage user in groups

UserManagerServiceImpl(DataService) - Constructor for class org.molgenis.security.usermanager.UserManagerServiceImpl

USERNAME - Static variable in class org.molgenis.omx.auth.MolgenisUser

V

validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService

validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService

Validates the password of the current logged in user

validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl

W

WebAppSecurityInitializer - Class in org.molgenis.security

WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer

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