Index (molgenis-security 1.15.0 API)

A C D E F G H I J L M N O P Q R S T U V W

A

AccountController - Class in org.molgenis.security.account
AccountController(AccountService, CaptchaService, RedirectStrategy, AppSettings) - Constructor for class org.molgenis.security.account.AccountController
AccountService - Interface in org.molgenis.security.account
AccountServiceImpl - Class in org.molgenis.security.account
AccountServiceImpl(DataService, JavaMailSender, MolgenisUserService, AppSettings) - Constructor for class org.molgenis.security.account.AccountServiceImpl
activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController
activateUser(String) - Method in interface org.molgenis.security.account.AccountService: Activate a registered user
activateUser(String) - Method in class org.molgenis.security.account.AccountServiceImpl
ACTIVATIONCODE - Static variable in class org.molgenis.auth.MolgenisUser
ActivationMode - Enum in org.molgenis.security.account
ACTIVE - Static variable in class org.molgenis.auth.MolgenisGroup
ACTIVE - Static variable in class org.molgenis.auth.MolgenisUser
add(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
add(Iterable<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
add(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator
add(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator
addEntityListener(EntityListener) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
addEntityListener(EntityListener) - Method in class org.molgenis.security.user.MolgenisUserDecorator
addGroupPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
addHierarchyPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
ADDRESS - Static variable in class org.molgenis.auth.MolgenisUser
addUserPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
AFFILIATION - Static variable in class org.molgenis.auth.MolgenisUser
afterPropertiesSet() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
aggregate(AggregateQuery) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
aggregate(AggregateQuery) - Method in class org.molgenis.security.user.MolgenisUserDecorator
AjaxAwareLoginUrlAuthenticationEntryPoint - Class in org.molgenis.security
AjaxAwareLoginUrlAuthenticationEntryPoint(String) - Constructor for class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
ALL_USER_GROUP - Static variable in interface org.molgenis.security.account.AccountService
anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
apiSessionExpirationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
ApiSessionExpirationFilter - Class in org.molgenis.security.session: Check if the requested sessionId is valid for an api call.
ApiSessionExpirationFilter() - Constructor for class org.molgenis.security.session.ApiSessionExpirationFilter
attemptAuthentication(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
authenticate(Authentication) - Method in class org.molgenis.security.token.TokenAuthenticationProvider
authenticationEntryPoint() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
Authority - Interface in org.molgenis.auth: Authority: .

C

CaptchaController - Class in org.molgenis.security.captcha
CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController
CaptchaException - Exception in org.molgenis.security.captcha
CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException
CaptchaRequest - Class in org.molgenis.security.captcha
CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest
CaptchaService - Class in org.molgenis.security.captcha
CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService
CHANGE_PASSWORD_URI - Static variable in class org.molgenis.security.account.AccountController
CHANGEPASSWORD - Static variable in class org.molgenis.auth.MolgenisUser
changePassword(ChangePasswordForm, HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.account.AccountController
changePassword(String, String) - Method in interface org.molgenis.security.account.AccountService
changePassword(String, String) - Method in class org.molgenis.security.account.AccountServiceImpl
changePasswordFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
ChangePasswordForm - Class in org.molgenis.security.account
ChangePasswordForm() - Constructor for class org.molgenis.security.account.ChangePasswordForm
check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker
CITY - Static variable in class org.molgenis.auth.MolgenisUser
clearCache() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
clearCache() - Method in class org.molgenis.security.user.MolgenisUserDecorator
close() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
close() - Method in class org.molgenis.security.user.MolgenisUserDecorator
commence(HttpServletRequest, HttpServletResponse, AuthenticationException) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
CorsFilter - Class in org.molgenis.security: Filter to enable Cross-origin resource sharing (CORS)
CorsFilter() - Constructor for class org.molgenis.security.CorsFilter
CorsInterceptor - Class in org.molgenis.security
CorsInterceptor() - Constructor for class org.molgenis.security.CorsInterceptor
count() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
count(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
count() - Method in class org.molgenis.security.user.MolgenisUserDecorator
count(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator
COUNTRY - Static variable in class org.molgenis.auth.MolgenisUser
create() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
create() - Method in class org.molgenis.security.user.MolgenisUserDecorator
createAnonymousUserAuthorities() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
createAuthentication(HttpServletRequest) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService: Creates a Captcha and stores it in the session.
createUser(MolgenisUser, String) - Method in interface org.molgenis.security.account.AccountService
createUser(MolgenisUser, String) - Method in class org.molgenis.security.account.AccountServiceImpl
CREATIONDATE - Static variable in class org.molgenis.security.token.MolgenisToken

D

DataServiceTokenService - Class in org.molgenis.security.token: TokensService implementation that uses the DataService
DataServiceTokenService(TokenGenerator, DataService, UserDetailsService) - Constructor for class org.molgenis.security.token.DataServiceTokenService
delete(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
delete(Iterable<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
delete(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator
delete(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator
deleteAll() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
deleteAll() - Method in class org.molgenis.security.user.MolgenisUserDecorator
deleteById(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
deleteById(Iterable<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
deleteById(Object) - Method in class org.molgenis.security.user.MolgenisUserDecorator
deleteById(Iterable<Object>) - Method in class org.molgenis.security.user.MolgenisUserDecorator
DEPARTMENT - Static variable in class org.molgenis.auth.MolgenisUser
DESCRIPTION - Static variable in class org.molgenis.security.token.MolgenisToken
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisChangePasswordFilter
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.session.ApiSessionExpirationFilter
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.token.TokenAuthenticationFilter
doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.CorsFilter
drop() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
drop() - Method in class org.molgenis.security.user.MolgenisUserDecorator

E

EMAIL - Static variable in class org.molgenis.auth.MolgenisUser
EmailAlreadyExistsException - Exception in org.molgenis.security.account
EmailAlreadyExistsException() - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
EmailAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
EmailAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
EmailAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
EmailAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
ENTITY_NAME - Static variable in class org.molgenis.auth.GroupAuthority
ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisGroup
ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisGroupMember
ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisUser
ENTITY_NAME - Static variable in class org.molgenis.auth.UserAuthority
ENTITY_NAME - Static variable in class org.molgenis.security.token.MolgenisToken
equals(Object) - Method in class org.molgenis.auth.GroupAuthority
equals(Object) - Method in class org.molgenis.auth.MolgenisGroup
equals(Object) - Method in class org.molgenis.auth.MolgenisGroupMember
equals(Object) - Method in class org.molgenis.auth.MolgenisUser
equals(Object) - Method in class org.molgenis.auth.UserAuthority
equals(Object) - Method in class org.molgenis.security.permission.Permission
equals(Object) - Method in class org.molgenis.security.token.MolgenisToken
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.HasPermissionDirective
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.NotHasPermissionDirective
execute(Environment, Map, TemplateModel[], TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective
EXPIRATIONDATE - Static variable in class org.molgenis.security.token.MolgenisToken

F

FAX - Static variable in class org.molgenis.auth.MolgenisUser
findAll(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findAll(Iterable<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findAll(Iterable<Object>, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findAll(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findAll(Iterable<Object>) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findAll(Iterable<Object>, Fetch) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findOne(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findOne(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findOne(Object, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
findOne(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findOne(Object) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findOne(Object, Fetch) - Method in class org.molgenis.security.user.MolgenisUserDecorator
findUserByToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService: Find a user by a security token
FIRSTNAME - Static variable in class org.molgenis.auth.MolgenisUser
flush() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
flush() - Method in class org.molgenis.security.user.MolgenisUserDecorator
from(String, ActivationMode) - Static method in enum org.molgenis.security.account.ActivationMode

G

generateAndStoreToken(String, String) - Method in class org.molgenis.security.token.DataServiceTokenService: Generates a token and associates it with a user.
generateToken() - Method in class org.molgenis.security.token.TokenGenerator
get(String) - Method in class org.molgenis.auth.GroupAuthority: Generic getter.
get(String) - Method in class org.molgenis.auth.MolgenisGroup: Generic getter.
get(String) - Method in class org.molgenis.auth.MolgenisGroupMember: Generic getter.
get(String) - Method in class org.molgenis.auth.MolgenisUser: Generic getter.
get(String) - Method in class org.molgenis.auth.UserAuthority: Generic getter.
get(String) - Method in class org.molgenis.security.token.MolgenisToken: Generic getter.
getActivationCode() - Method in class org.molgenis.auth.MolgenisUser: Get the Used as alternative authentication mechanism to verify user email and/or if user has lost password..
getActive() - Method in class org.molgenis.auth.MolgenisGroup: Get the Boolean to indicate whether this group is in use..
getActive() - Method in class org.molgenis.auth.MolgenisUser: Get the Boolean to indicate if this account can be used to login.
getAddress() - Method in class org.molgenis.auth.MolgenisUser: Get the The address of the Contact..
getAffiliation() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getAllUsersGroup() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
getAllUsersGroup() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
getAnonymousUser() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
getAnonymousUser() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
getAttributeNames() - Method in class org.molgenis.auth.GroupAuthority
getAttributeNames() - Method in class org.molgenis.auth.MolgenisGroup
getAttributeNames() - Method in class org.molgenis.auth.MolgenisGroupMember
getAttributeNames() - Method in class org.molgenis.auth.MolgenisUser
getAttributeNames() - Method in class org.molgenis.auth.UserAuthority
getAttributeNames() - Method in class org.molgenis.security.token.MolgenisToken
getAuthorities() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
getAuthorities(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserDetailsService
getCapabilities() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
getCapabilities() - Method in class org.molgenis.security.user.MolgenisUserDecorator
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest
getChangePassword() - Method in class org.molgenis.auth.MolgenisUser: Get the If true the user must first change his password before he can proceed.
getChangePasswordForm() - Method in class org.molgenis.security.account.AccountController
getCity() - Method in class org.molgenis.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getCountry() - Method in class org.molgenis.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getCreationDate() - Method in class org.molgenis.security.token.MolgenisToken: Get the .
getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService: Returns the currently logged in user
getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl
getCurrentUserGroups() - Method in interface org.molgenis.security.user.UserAccountService: Returns the groups to which the currently logged in user belongs
getCurrentUserGroups() - Method in class org.molgenis.security.user.UserAccountServiceImpl
getDepartment() - Method in class org.molgenis.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getDescription() - Method in class org.molgenis.security.token.MolgenisToken: Get the .
getEmail() - Method in class org.molgenis.auth.MolgenisUser: Get the The email address of the Contact..
getEntityClassIds() - Method in interface org.molgenis.security.permission.PermissionManagerService
getEntityClassIds() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getEntityIds() - Method in class org.molgenis.security.permission.Permissions
getEntityMetaData() - Method in class org.molgenis.auth.GroupAuthority
getEntityMetaData() - Method in class org.molgenis.auth.MolgenisGroup
getEntityMetaData() - Method in class org.molgenis.auth.MolgenisGroupMember
getEntityMetaData() - Method in class org.molgenis.auth.MolgenisUser
getEntityMetaData() - Method in class org.molgenis.auth.UserAuthority
getEntityMetaData() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
getEntityMetaData() - Method in class org.molgenis.security.token.MolgenisToken
getEntityMetaData() - Method in class org.molgenis.security.user.MolgenisUserDecorator
getEntityName() - Method in class org.molgenis.auth.GroupAuthority
getEntityName() - Method in class org.molgenis.auth.MolgenisGroup
getEntityName() - Method in class org.molgenis.auth.MolgenisGroupMember
getEntityName() - Method in class org.molgenis.auth.MolgenisUser
getEntityName() - Method in class org.molgenis.auth.UserAuthority
getEntityName() - Method in class org.molgenis.security.token.MolgenisToken
getExpirationDate() - Method in class org.molgenis.security.token.MolgenisToken: Get the When expiration date is null it will never expire.
getFax() - Method in class org.molgenis.auth.MolgenisUser: Get the The fax number of the Contact..
getFirstName() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getGoogleAccountId() - Method in class org.molgenis.auth.MolgenisUser: Get the An identifier for the user, unique among all Google accounts and never reused..
getGroup() - Method in class org.molgenis.security.permission.Permission
getGroupEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
getGroupEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getGroupId() - Method in class org.molgenis.security.permission.Permissions
getGroupPermissions() - Method in class org.molgenis.security.permission.Permissions
getGroupPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
getGroupPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getGroups() - Method in interface org.molgenis.security.permission.PermissionManagerService
getGroups() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getHierarchyPermissionMap() - Method in class org.molgenis.security.permission.Permissions
getId() - Method in class org.molgenis.auth.GroupAuthority: Get the .
getId() - Method in class org.molgenis.auth.MolgenisGroup: Get the .
getId() - Method in class org.molgenis.auth.MolgenisGroupMember: Get the .
getId() - Method in class org.molgenis.auth.MolgenisUser: Get the automatically generated internal id, only for internal use..
getId() - Method in class org.molgenis.auth.UserAuthority: Get the .
getId() - Method in class org.molgenis.security.token.MolgenisToken: Get the .
getIdValue() - Method in class org.molgenis.auth.GroupAuthority
getIdValue() - Method in class org.molgenis.auth.MolgenisGroup
getIdValue() - Method in class org.molgenis.auth.MolgenisGroupMember
getIdValue() - Method in class org.molgenis.auth.MolgenisUser
getIdValue() - Method in class org.molgenis.auth.UserAuthority
getIdValue() - Method in class org.molgenis.security.token.MolgenisToken
getLanguageCode() - Method in class org.molgenis.auth.MolgenisUser: Get the Selected language for this site..
getLastName() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getLoginErrorPage(Model, HttpServletRequest) - Method in class org.molgenis.security.login.MolgenisLoginController
getLoginForm() - Method in class org.molgenis.security.account.AccountController
getLoginPage(Model, HttpSession) - Method in class org.molgenis.security.login.MolgenisLoginController
getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException
getMiddleNames() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getMolgenisGroup() - Method in class org.molgenis.auth.GroupAuthority: Get the .
getMolgenisGroup() - Method in class org.molgenis.auth.MolgenisGroupMember: Get the .
getMolgenisUser() - Method in class org.molgenis.auth.MolgenisGroupMember: Get the .
getMolgenisUser() - Method in class org.molgenis.auth.UserAuthority: Get the .
getMolgenisUser() - Method in class org.molgenis.security.token.MolgenisToken: Get the .
getName() - Method in class org.molgenis.auth.MolgenisGroup: Get the .
getName() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
getName() - Method in class org.molgenis.security.user.MolgenisUserDecorator
getPassword() - Method in class org.molgenis.auth.MolgenisUser: Get the This is the hashed password, enter a new plaintext password to update..
getPassword1() - Method in class org.molgenis.security.account.ChangePasswordForm
getPassword2() - Method in class org.molgenis.security.account.ChangePasswordForm
getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController
getPhone() - Method in class org.molgenis.auth.MolgenisUser: Get the The telephone number of the Contact including the suitable area codes..
getPlugins() - Method in interface org.molgenis.security.permission.PermissionManagerService
getPlugins() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getPrincipal() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.security.MolgenisRoleHierarchy
getRegisterForm() - Method in class org.molgenis.security.account.AccountController
getRole() - Method in interface org.molgenis.auth.Authority
getRole() - Method in class org.molgenis.auth.GroupAuthority: Get the .
getRole() - Method in class org.molgenis.auth.MolgenisUser: Get the Indicate role of the contact, e.g.
getRole() - Method in class org.molgenis.auth.UserAuthority: Get the .
getSuEmailAddresses() - Method in interface org.molgenis.security.user.MolgenisUserService: Returns e-mail addresses of super users
getSuEmailAddresses() - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
getSuperuser() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getTitle() - Method in class org.molgenis.auth.MolgenisUser: Get the An academic title, e.g.
getToken() - Method in class org.molgenis.security.token.MolgenisToken: Get the .
getToken() - Method in class org.molgenis.security.token.RestAuthenticationToken
getToken(HttpServletRequest) - Static method in class org.molgenis.security.token.TokenExtractor
getTollFreePhone() - Method in class org.molgenis.auth.MolgenisUser: Get the A toll free phone number for the Contact, including suitable area codes..
getType() - Method in class org.molgenis.security.permission.Permission
getUser(String) - Method in interface org.molgenis.security.user.MolgenisUserService: Returns the given user
getUser(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
getUserAdmin() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
getUserAdmin() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
getUserByEmail(String) - Method in interface org.molgenis.security.user.MolgenisUserService: Find a user by it's email.
getUserByEmail(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
getUserEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
getUserEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getUserGroups(String) - Method in interface org.molgenis.security.user.MolgenisUserService: Returns the groups that the given user belongs to
getUserGroups(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
getUserId() - Method in class org.molgenis.security.permission.Permissions
getUsername() - Method in class org.molgenis.auth.MolgenisUser: Get the .
getUserPermissions() - Method in class org.molgenis.security.permission.Permissions
getUserPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
getUserPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
getUsers() - Method in interface org.molgenis.security.permission.PermissionManagerService
getUsers() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
giveUserEntityPermissions(SecurityContext, List<String>) - Method in class org.molgenis.security.permission.PermissionSystemService
GOOGLE_AUTHENTICATION_URL - Static variable in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
GOOGLEACCOUNTID - Static variable in class org.molgenis.auth.MolgenisUser
GoogleAuthenticationProcessingFilter - Class in org.molgenis.security.google
GoogleAuthenticationProcessingFilter(GooglePublicKeysManager, DataService, MolgenisUserDetailsService, AppSettings) - Constructor for class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
googleAuthenticationProcessingFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
googlePublicKeysManager() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
GroupAuthority - Class in org.molgenis.auth: GroupAuthority: .
GroupAuthority() - Constructor for class org.molgenis.auth.GroupAuthority
GroupAuthorityMetaData - Class in org.molgenis.auth
GroupAuthorityMetaData() - Constructor for class org.molgenis.auth.GroupAuthorityMetaData
GroupAuthorityRepository - Class in org.molgenis.auth
GroupAuthorityRepository(QueryResolver) - Constructor for class org.molgenis.auth.GroupAuthorityRepository
GroupAuthorityRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.GroupAuthorityRepository: For testing purposes

H

handleEmailAlreadyExistsException(EmailAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController
handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController
handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController
handleUsernameAlreadyExistsException(UsernameAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
hashCode() - Method in class org.molgenis.auth.GroupAuthority
hashCode() - Method in class org.molgenis.auth.MolgenisGroup
hashCode() - Method in class org.molgenis.auth.MolgenisGroupMember
hashCode() - Method in class org.molgenis.auth.MolgenisUser
hashCode() - Method in class org.molgenis.auth.UserAuthority
hashCode() - Method in class org.molgenis.security.permission.Permission
hashCode() - Method in class org.molgenis.security.token.MolgenisToken
HasPermissionDirective - Class in org.molgenis.security.freemarker: Directive that prints the body of the tag if the current user has permission on entity usage: <@hasPermission entityName='celiacsprue' permission="WRITE">write permission
HasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.HasPermissionDirective
hasPermissionOnEntity(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl
hasPermissionOnPlugin(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl
hasWritePermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController

I

ID - Static variable in class org.molgenis.auth.GroupAuthority
ID - Static variable in class org.molgenis.auth.MolgenisGroup
ID - Static variable in class org.molgenis.auth.MolgenisGroupMember
ID - Static variable in class org.molgenis.auth.MolgenisUser
ID - Static variable in class org.molgenis.auth.UserAuthority
ID - Static variable in class org.molgenis.security.token.MolgenisToken
isRestRequest(HttpServletRequest) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint: Checks if it is a rest request
iterator() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
iterator() - Method in class org.molgenis.security.user.MolgenisUserDecorator

J

JDBCMetaDatabase - Class in org.molgenis: This class is an in memory representation of the contents of your *_db.xml file Utility of this class is to allow for dynamic querying and/or user interfacing for example within a query tool or a security module.
JDBCMetaDatabase() - Constructor for class org.molgenis.JDBCMetaDatabase

L

LANGUAGECODE - Static variable in class org.molgenis.auth.MolgenisUser
LASTNAME - Static variable in class org.molgenis.auth.MolgenisUser
loadUserByUsername(String) - Method in class org.molgenis.security.user.MolgenisUserDetailsService

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker
MIDDLENAMES - Static variable in class org.molgenis.auth.MolgenisUser
MIN_PASSWORD_LENGTH - Static variable in interface org.molgenis.security.user.UserAccountService
MolgenisAnonymousAuthenticationFilter - Class in org.molgenis.security: Based on org.springframework.security.web.authentication.AnonymousAuthenticationFilter: Detects if there is no Authentication object in the SecurityContextHolder, and populates it with one if needed.
MolgenisAnonymousAuthenticationFilter(String, Object, UserDetailsService) - Constructor for class org.molgenis.security.MolgenisAnonymousAuthenticationFilter: Creates a filter with a principal named "anonymousUser" and the single authority "ROLE_ANONYMOUS".
MolgenisChangePasswordFilter - Class in org.molgenis.security
MolgenisChangePasswordFilter(MolgenisUserService, RedirectStrategy) - Constructor for class org.molgenis.security.MolgenisChangePasswordFilter
MOLGENISGROUP - Static variable in class org.molgenis.auth.GroupAuthority
MolgenisGroup - Class in org.molgenis.auth: MolgenisGroup: .
MolgenisGroup() - Constructor for class org.molgenis.auth.MolgenisGroup
MOLGENISGROUP - Static variable in class org.molgenis.auth.MolgenisGroupMember
MolgenisGroupMember - Class in org.molgenis.auth: MolgenisGroupMember: .
MolgenisGroupMember() - Constructor for class org.molgenis.auth.MolgenisGroupMember
MolgenisGroupMemberMetaData - Class in org.molgenis.auth
MolgenisGroupMemberMetaData() - Constructor for class org.molgenis.auth.MolgenisGroupMemberMetaData
MolgenisGroupMemberRepository - Class in org.molgenis.auth
MolgenisGroupMemberRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupMemberRepository
MolgenisGroupMemberRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupMemberRepository: For testing purposes
MolgenisGroupMetaData - Class in org.molgenis.auth
MolgenisGroupMetaData() - Constructor for class org.molgenis.auth.MolgenisGroupMetaData
MolgenisGroupRepository - Class in org.molgenis.auth
MolgenisGroupRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupRepository
MolgenisGroupRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupRepository: For testing purposes
MolgenisLoginController - Class in org.molgenis.security.login
MolgenisLoginController() - Constructor for class org.molgenis.security.login.MolgenisLoginController
MolgenisPermissionController - Class in org.molgenis.security.permission
MolgenisPermissionController(MolgenisPermissionService) - Constructor for class org.molgenis.security.permission.MolgenisPermissionController
molgenisPermissionService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
MolgenisPermissionServiceImpl - Class in org.molgenis.security.permission
MolgenisPermissionServiceImpl() - Constructor for class org.molgenis.security.permission.MolgenisPermissionServiceImpl
MolgenisRoleHierarchy - Class in org.molgenis.security
MolgenisRoleHierarchy() - Constructor for class org.molgenis.security.MolgenisRoleHierarchy
MolgenisSecurityWebAppDatabasePopulatorService - Interface in org.molgenis.security
MolgenisSecurityWebAppDatabasePopulatorServiceImpl - Class in org.molgenis.security
MolgenisSecurityWebAppDatabasePopulatorServiceImpl() - Constructor for class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
MolgenisToken - Class in org.molgenis.security.token: MolgenisToken: .
MolgenisToken() - Constructor for class org.molgenis.security.token.MolgenisToken
MolgenisTokenMetaData - Class in org.molgenis.security.token
MolgenisTokenMetaData() - Constructor for class org.molgenis.security.token.MolgenisTokenMetaData
MolgenisTokenRepository - Class in org.molgenis.security.token
MolgenisTokenRepository(QueryResolver) - Constructor for class org.molgenis.security.token.MolgenisTokenRepository
MolgenisTokenRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.security.token.MolgenisTokenRepository: For testing purposes
MOLGENISUSER - Static variable in class org.molgenis.auth.MolgenisGroupMember
MolgenisUser - Class in org.molgenis.auth: MolgenisUser: Anyone who can login.
MolgenisUser() - Constructor for class org.molgenis.auth.MolgenisUser
MOLGENISUSER - Static variable in class org.molgenis.auth.UserAuthority
MOLGENISUSER - Static variable in class org.molgenis.security.token.MolgenisToken
MolgenisUserDecorator - Class in org.molgenis.security.user
MolgenisUserDecorator(Repository) - Constructor for class org.molgenis.security.user.MolgenisUserDecorator
MolgenisUserDetailsChecker - Class in org.molgenis.security.user: Checks user details during the authentication process
MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker
MolgenisUserDetailsService - Class in org.molgenis.security.user
MolgenisUserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.MolgenisUserDetailsService
MolgenisUserException - Exception in org.molgenis.security.user
MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException
MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException
MolgenisUserMetaData - Class in org.molgenis.auth
MolgenisUserMetaData() - Constructor for class org.molgenis.auth.MolgenisUserMetaData
MolgenisUserRepository - Class in org.molgenis.auth
MolgenisUserRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisUserRepository
MolgenisUserRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisUserRepository: For testing purposes
MolgenisUserService - Interface in org.molgenis.security.user
MolgenisUserServiceImpl - Class in org.molgenis.security.user: Manage user in groups
MolgenisUserServiceImpl(DataService) - Constructor for class org.molgenis.security.user.MolgenisUserServiceImpl
MolgenisWebAppSecurityConfig - Class in org.molgenis.security
MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig

N

NAME - Static variable in class org.molgenis.auth.MolgenisGroup
NotHasPermissionDirective - Class in org.molgenis.security.freemarker: Directive that prints the body of the tag if the current user has no permission on entity usage: <@notHasPermission entity='celiacsprue' permission="WRITE">no write permission
NotHasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.NotHasPermissionDirective

O

org.molgenis - package org.molgenis
org.molgenis.auth - package org.molgenis.auth
org.molgenis.security - package org.molgenis.security
org.molgenis.security.account - package org.molgenis.security.account
org.molgenis.security.captcha - package org.molgenis.security.captcha
org.molgenis.security.freemarker - package org.molgenis.security.freemarker
org.molgenis.security.google - package org.molgenis.security.google
org.molgenis.security.login - package org.molgenis.security.login
org.molgenis.security.owned - package org.molgenis.security.owned
org.molgenis.security.permission - package org.molgenis.security.permission
org.molgenis.security.session - package org.molgenis.security.session
org.molgenis.security.token - package org.molgenis.security.token
org.molgenis.security.user - package org.molgenis.security.user
OwnedEntityRepositoryDecorator - Class in org.molgenis.security.owned: RepositoryDecorator that works on EntityMetaData that extends OwnedEntityMetaData.
OwnedEntityRepositoryDecorator(Repository) - Constructor for class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

P

PASSWORD_ - Static variable in class org.molgenis.auth.MolgenisUser
passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
Permission - Class in org.molgenis.security.permission
Permission() - Constructor for class org.molgenis.security.permission.Permission
PermissionDirective - Class in org.molgenis.security.freemarker
PermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.PermissionDirective
PermissionManagerService - Interface in org.molgenis.security.permission: Manage user and group permissions for plugins and entity classes
PermissionManagerServiceImpl - Class in org.molgenis.security.permission
PermissionManagerServiceImpl(DataService, MolgenisPluginRegistry, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.permission.PermissionManagerServiceImpl
Permissions - Class in org.molgenis.security.permission
Permissions() - Constructor for class org.molgenis.security.permission.Permissions
PermissionSystemService - Class in org.molgenis.security.permission
PermissionSystemService(DataService) - Constructor for class org.molgenis.security.permission.PermissionSystemService
PHONE - Static variable in class org.molgenis.auth.MolgenisUser
populateDatabase(DataService, String) - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
populateDatabase(DataService, String) - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
preHandle(HttpServletRequest, HttpServletResponse, Object) - Method in class org.molgenis.security.CorsInterceptor

Q

query() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
query() - Method in class org.molgenis.security.user.MolgenisUserDecorator

R

rebuildIndex() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
rebuildIndex() - Method in class org.molgenis.security.user.MolgenisUserDecorator
redirectStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController
removeCaptcha() - Method in class org.molgenis.security.captcha.CaptchaService
removeEntityListener(EntityListener) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
removeEntityListener(EntityListener) - Method in class org.molgenis.security.user.MolgenisUserDecorator
removeToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService
replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
replaceUserPluginPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
replaceUserPluginPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController
resetPassword(String) - Method in interface org.molgenis.security.account.AccountService
resetPassword(String) - Method in class org.molgenis.security.account.AccountServiceImpl
RestAuthenticationToken - Class in org.molgenis.security.token: Holds the api token, passed by the client via a custom HTTP header
RestAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
RestAuthenticationToken(String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
ROLE - Static variable in class org.molgenis.auth.GroupAuthority
ROLE - Static variable in class org.molgenis.auth.MolgenisUser
ROLE - Static variable in class org.molgenis.auth.UserAuthority
roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

S

SESSION_EXPIRED_SESSION_ATTR - Static variable in class org.molgenis.security.login.MolgenisLoginController
set(Entity) - Method in class org.molgenis.auth.GroupAuthority
set(Entity, boolean) - Method in class org.molgenis.auth.GroupAuthority
set(String, Object) - Method in class org.molgenis.auth.GroupAuthority
set(Entity) - Method in class org.molgenis.auth.MolgenisGroup
set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisGroup
set(String, Object) - Method in class org.molgenis.auth.MolgenisGroup
set(Entity) - Method in class org.molgenis.auth.MolgenisGroupMember
set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisGroupMember
set(String, Object) - Method in class org.molgenis.auth.MolgenisGroupMember
set(Entity) - Method in class org.molgenis.auth.MolgenisUser
set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisUser
set(String, Object) - Method in class org.molgenis.auth.MolgenisUser
set(Entity) - Method in class org.molgenis.auth.UserAuthority
set(Entity, boolean) - Method in class org.molgenis.auth.UserAuthority
set(String, Object) - Method in class org.molgenis.auth.UserAuthority
set(Entity) - Method in class org.molgenis.security.token.MolgenisToken
set(Entity, boolean) - Method in class org.molgenis.security.token.MolgenisToken
set(String, Object) - Method in class org.molgenis.security.token.MolgenisToken
setActivationCode(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Used as alternative authentication mechanism to verify user email and/or if user has lost password..
setActive(Boolean) - Method in class org.molgenis.auth.MolgenisGroup: Set the Boolean to indicate whether this group is in use..
setActive(Boolean) - Method in class org.molgenis.auth.MolgenisUser: Set the Boolean to indicate if this account can be used to login.
setAddress(String) - Method in class org.molgenis.auth.MolgenisUser: Set the The address of the Contact..
setAffiliation(String) - Method in class org.molgenis.auth.MolgenisUser: Set the .
setAuthenticationDetailsSource(AuthenticationDetailsSource<HttpServletRequest, ?>) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest
setChangePassword(Boolean) - Method in class org.molgenis.auth.MolgenisUser: Set the If true the user must first change his password before he can proceed.
setCity(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setCountry(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setCreationDate(Date) - Method in class org.molgenis.security.token.MolgenisToken: Set the .
setDepartment(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setDescription(String) - Method in class org.molgenis.security.token.MolgenisToken: Set the .
setEmail(String) - Method in class org.molgenis.auth.MolgenisUser: Set the The email address of the Contact..
setEntityIds(Map<String, String>) - Method in class org.molgenis.security.permission.Permissions
setExpirationDate(Date) - Method in class org.molgenis.security.token.MolgenisToken: Set the When expiration date is null it will never expire.
setFax(String) - Method in class org.molgenis.auth.MolgenisUser: Set the The fax number of the Contact..
setFirstName(String) - Method in class org.molgenis.auth.MolgenisUser: Set the .
setGoogleAccountId(String) - Method in class org.molgenis.auth.MolgenisUser: Set the An identifier for the user, unique among all Google accounts and never reused..
setGroup(String) - Method in class org.molgenis.security.permission.Permission
setGroupId(String) - Method in class org.molgenis.security.permission.Permissions
setId(String) - Method in class org.molgenis.auth.GroupAuthority: Set the .
setId(String) - Method in class org.molgenis.auth.MolgenisGroup: Set the .
setId(String) - Method in class org.molgenis.auth.MolgenisGroupMember: Set the .
setId(String) - Method in class org.molgenis.auth.MolgenisUser: Set the automatically generated internal id, only for internal use..
setId(String) - Method in class org.molgenis.auth.UserAuthority: Set the .
setId(String) - Method in class org.molgenis.security.token.MolgenisToken: Set the .
setLanguageCode(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Selected language for this site..
setLastName(String) - Method in class org.molgenis.auth.MolgenisUser: Set the .
setMiddleNames(String) - Method in class org.molgenis.auth.MolgenisUser: Set the .
setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.auth.GroupAuthority: Set the .
setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.auth.MolgenisGroupMember: Set the .
setMolgenisUser(MolgenisUser) - Method in class org.molgenis.auth.MolgenisGroupMember: Set the .
setMolgenisUser(MolgenisUser) - Method in class org.molgenis.auth.UserAuthority: Set the .
setMolgenisUser(MolgenisUser) - Method in class org.molgenis.security.token.MolgenisToken: Set the .
setName(String) - Method in class org.molgenis.auth.MolgenisGroup: Set the .
setPassword(String) - Method in class org.molgenis.auth.MolgenisUser: Set the This is the hashed password, enter a new plaintext password to update..
setPassword1(String) - Method in class org.molgenis.security.account.ChangePasswordForm
setPassword2(String) - Method in class org.molgenis.security.account.ChangePasswordForm
setPhone(String) - Method in class org.molgenis.auth.MolgenisUser: Set the The telephone number of the Contact including the suitable area codes..
setRole(String) - Method in interface org.molgenis.auth.Authority
setRole(String) - Method in class org.molgenis.auth.GroupAuthority: Set the .
setRole(String) - Method in class org.molgenis.auth.MolgenisUser: Set the Indicate role of the contact, e.g.
setRole(String) - Method in class org.molgenis.auth.UserAuthority: Set the .
setSuperuser(Boolean) - Method in class org.molgenis.auth.MolgenisUser: Set the .
setTitle(String) - Method in class org.molgenis.auth.MolgenisUser: Set the An academic title, e.g.
setToken(String) - Method in class org.molgenis.security.token.MolgenisToken: Set the .
setTollFreePhone(String) - Method in class org.molgenis.auth.MolgenisUser: Set the A toll free phone number for the Contact, including suitable area codes..
setType(String) - Method in class org.molgenis.security.permission.Permission
setUserId(String) - Method in class org.molgenis.security.permission.Permissions
setUsername(String) - Method in class org.molgenis.auth.MolgenisUser: Set the .
sort() - Method in class org.molgenis.security.permission.Permissions
SUPERUSER - Static variable in class org.molgenis.auth.MolgenisUser
supports(Class<?>) - Method in class org.molgenis.security.token.TokenAuthenticationProvider

T

TITLE - Static variable in class org.molgenis.auth.MolgenisUser
TOKEN - Static variable in class org.molgenis.security.token.MolgenisToken
TOKEN_HEADER - Static variable in class org.molgenis.security.token.TokenExtractor
TOKEN_PARAMETER - Static variable in class org.molgenis.security.token.TokenExtractor
tokenAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TokenAuthenticationFilter - Class in org.molgenis.security.token: Servlet filter that checks the httprequest for a molgenis security token and if valid logs the user in, else returns a 401
TokenAuthenticationFilter(AuthenticationProvider) - Constructor for class org.molgenis.security.token.TokenAuthenticationFilter
tokenAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TokenAuthenticationProvider - Class in org.molgenis.security.token: AuthenticationProvider that uses the TokenService and expects a RestAuthenticationToken
TokenAuthenticationProvider(TokenService) - Constructor for class org.molgenis.security.token.TokenAuthenticationProvider
TokenExtractor - Class in org.molgenis.security.token: Get a molgenis authentication token from a HttpServletRequest
TokenExtractor() - Constructor for class org.molgenis.security.token.TokenExtractor
TokenGenerator - Class in org.molgenis.security.token: Generates a secure token
TokenGenerator() - Constructor for class org.molgenis.security.token.TokenGenerator
tokenService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TOLLFREEPHONE - Static variable in class org.molgenis.auth.MolgenisUser
toString() - Method in class org.molgenis.auth.GroupAuthority
toString(boolean) - Method in class org.molgenis.auth.GroupAuthority
toString() - Method in class org.molgenis.auth.MolgenisGroup
toString(boolean) - Method in class org.molgenis.auth.MolgenisGroup
toString() - Method in class org.molgenis.auth.MolgenisGroupMember
toString(boolean) - Method in class org.molgenis.auth.MolgenisGroupMember
toString() - Method in class org.molgenis.auth.MolgenisUser
toString(boolean) - Method in class org.molgenis.auth.MolgenisUser
toString() - Method in class org.molgenis.auth.UserAuthority
toString(boolean) - Method in class org.molgenis.auth.UserAuthority
toString() - Method in class org.molgenis.security.permission.Permission
toString() - Method in class org.molgenis.security.token.MolgenisToken
toString(boolean) - Method in class org.molgenis.security.token.MolgenisToken

U

update(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
update(Iterable<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
update(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator
update(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator
update(MolgenisUser) - Method in interface org.molgenis.security.user.MolgenisUserService: Update user
update(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
updateCurrentUser(MolgenisUser) - Method in interface org.molgenis.security.user.UserAccountService: Update the currently logged in user
updateCurrentUser(MolgenisUser) - Method in class org.molgenis.security.user.UserAccountServiceImpl
URI - Static variable in class org.molgenis.security.account.AccountController
UserAccountService - Interface in org.molgenis.security.user: Manage account of the current user
UserAccountServiceImpl - Class in org.molgenis.security.user
UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl
UserAuthority - Class in org.molgenis.auth: UserAuthority: .
UserAuthority() - Constructor for class org.molgenis.auth.UserAuthority
UserAuthorityMetaData - Class in org.molgenis.auth
UserAuthorityMetaData() - Constructor for class org.molgenis.auth.UserAuthorityMetaData
UserAuthorityRepository - Class in org.molgenis.auth
UserAuthorityRepository(QueryResolver) - Constructor for class org.molgenis.auth.UserAuthorityRepository
UserAuthorityRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.UserAuthorityRepository: For testing purposes
userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
USERNAME - Static variable in class org.molgenis.auth.MolgenisUser
UsernameAlreadyExistsException - Exception in org.molgenis.security.account
UsernameAlreadyExistsException() - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
UsernameAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
UsernameAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
UsernameAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
UsernameAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

V

validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService: Validates a captcha answer.
validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService: Validates the password of the current logged in user
validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl
valueOf(String) - Static method in enum org.molgenis.security.account.ActivationMode: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.molgenis.security.account.ActivationMode: Returns an array containing the constants of this enum type, in the order they are declared.

W

WebAppSecurityInitializer - Class in org.molgenis.security
WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer

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