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A

AccountController - Class in org.molgenis.security.account
 
AccountController(AccountService, CaptchaService, RedirectStrategy, AppSettings) - Constructor for class org.molgenis.security.account.AccountController
 
AccountService - Interface in org.molgenis.security.account
 
AccountServiceImpl - Class in org.molgenis.security.account
 
AccountServiceImpl(DataService, JavaMailSender, MolgenisUserService, AppSettings) - Constructor for class org.molgenis.security.account.AccountServiceImpl
 
activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController
 
activateUser(String) - Method in interface org.molgenis.security.account.AccountService
Activate a registered user
activateUser(String) - Method in class org.molgenis.security.account.AccountServiceImpl
 
ActivationMode - Enum in org.molgenis.security.account
 
add(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
add(Stream<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
addEntityListener(EntityListener) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
addGroupPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
 
addHierarchyPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
 
addUserPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions
 
afterPropertiesSet() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
aggregate(AggregateQuery) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
AjaxAwareLoginUrlAuthenticationEntryPoint - Class in org.molgenis.security
 
AjaxAwareLoginUrlAuthenticationEntryPoint(String) - Constructor for class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
 
ALL_USER_GROUP - Static variable in interface org.molgenis.security.account.AccountService
 
anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
apiSessionExpirationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
ApiSessionExpirationFilter - Class in org.molgenis.security.session
Check if the requested sessionId is valid for an api call.
ApiSessionExpirationFilter() - Constructor for class org.molgenis.security.session.ApiSessionExpirationFilter
 
attemptAuthentication(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
 
authenticate(Authentication) - Method in class org.molgenis.security.token.TokenAuthenticationProvider
 
authenticationEntryPoint() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 

C

CaptchaController - Class in org.molgenis.security.captcha
 
CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController
 
CaptchaException - Exception in org.molgenis.security.captcha
 
CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException
 
CaptchaRequest - Class in org.molgenis.security.captcha
 
CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest
 
CaptchaService - Class in org.molgenis.security.captcha
 
CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService
 
CHANGE_PASSWORD_URI - Static variable in class org.molgenis.security.account.AccountController
 
changePassword(ChangePasswordForm, HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.account.AccountController
 
changePassword(String, String) - Method in interface org.molgenis.security.account.AccountService
 
changePassword(String, String) - Method in class org.molgenis.security.account.AccountServiceImpl
 
changePasswordFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
ChangePasswordForm - Class in org.molgenis.security.account
 
ChangePasswordForm() - Constructor for class org.molgenis.security.account.ChangePasswordForm
 
check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker
 
clearCache() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
close() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
commence(HttpServletRequest, HttpServletResponse, AuthenticationException) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
 
configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
CorsFilter - Class in org.molgenis.security
Filter to enable Cross-origin resource sharing (CORS)
CorsFilter() - Constructor for class org.molgenis.security.CorsFilter
 
CorsInterceptor - Class in org.molgenis.security
 
CorsInterceptor() - Constructor for class org.molgenis.security.CorsInterceptor
 
count() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
count(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
create() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
createAnonymousUserAuthorities() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
createAuthentication(HttpServletRequest) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService
Creates a Captcha and stores it in the session.
createUser(MolgenisUser, String) - Method in interface org.molgenis.security.account.AccountService
 
createUser(MolgenisUser, String) - Method in class org.molgenis.security.account.AccountServiceImpl
 

D

DataServiceTokenService - Class in org.molgenis.security.token
TokensService implementation that uses the DataService
DataServiceTokenService(TokenGenerator, DataService, UserDetailsService) - Constructor for class org.molgenis.security.token.DataServiceTokenService
 
delete(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
delete(Stream<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
deleteAll() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
deleteById(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
deleteById(Stream<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisChangePasswordFilter
 
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.session.ApiSessionExpirationFilter
 
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.token.TokenAuthenticationFilter
 
doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.CorsFilter
 
drop() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 

E

EmailAlreadyExistsException - Exception in org.molgenis.security.account
 
EmailAlreadyExistsException() - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
 
EmailAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
 
EmailAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
 
EmailAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
 
EmailAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException
 
equals(Object) - Method in class org.molgenis.security.permission.Permission
 
ERROR_MESSAGE_DISABLED - Static variable in class org.molgenis.security.login.MolgenisLoginController
 
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.HasPermissionDirective
 
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.NotHasPermissionDirective
 
execute(Environment, Map, TemplateModel[], TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective
 
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective
 

F

findAll(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findAll(Stream<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findAll(Stream<Object>, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findOne(Query) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findOne(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findOne(Object, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
findUserByToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService
Find a user by a security token
flush() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
from(String, ActivationMode) - Static method in enum org.molgenis.security.account.ActivationMode
 

G

generateAndStoreToken(String, String) - Method in class org.molgenis.security.token.DataServiceTokenService
Generates a token and associates it with a user.
generateToken() - Method in class org.molgenis.security.token.TokenGenerator
 
getAllUsersGroup() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
 
getAllUsersGroup() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
 
getAnonymousUser() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
 
getAnonymousUser() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
 
getAuthorities() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
getAuthorities(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserDetailsService
 
getCapabilities() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController
 
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest
 
getChangePasswordForm() - Method in class org.molgenis.security.account.AccountController
 
getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService
Returns the currently logged in user
getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl
 
getCurrentUserGroups() - Method in interface org.molgenis.security.user.UserAccountService
Returns the groups to which the currently logged in user belongs
getCurrentUserGroups() - Method in class org.molgenis.security.user.UserAccountServiceImpl
 
getEntityClassIds() - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getEntityClassIds() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getEntityIds() - Method in class org.molgenis.security.permission.Permissions
 
getEntityMetaData() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
getGroup() - Method in class org.molgenis.security.permission.Permission
 
getGroupEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getGroupEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getGroupId() - Method in class org.molgenis.security.permission.Permissions
 
getGroupPermissions() - Method in class org.molgenis.security.permission.Permissions
 
getGroupPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getGroupPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getGroups() - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getGroups() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getHierarchyPermissionMap() - Method in class org.molgenis.security.permission.Permissions
 
getLoginErrorPage(Model, HttpServletRequest) - Method in class org.molgenis.security.login.MolgenisLoginController
 
getLoginForm() - Method in class org.molgenis.security.account.AccountController
 
getLoginPage(Model, HttpSession) - Method in class org.molgenis.security.login.MolgenisLoginController
 
getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException
 
getName() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
getPassword1() - Method in class org.molgenis.security.account.ChangePasswordForm
 
getPassword2() - Method in class org.molgenis.security.account.ChangePasswordForm
 
getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController
 
getPlugins() - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getPlugins() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getPrincipal() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.security.MolgenisRoleHierarchy
 
getRegisterForm() - Method in class org.molgenis.security.account.AccountController
 
getSuEmailAddresses() - Method in interface org.molgenis.security.user.MolgenisUserService
Returns e-mail addresses of super users
getSuEmailAddresses() - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
 
getToken() - Method in class org.molgenis.security.token.RestAuthenticationToken
 
getToken(HttpServletRequest) - Static method in class org.molgenis.security.token.TokenExtractor
 
getType() - Method in class org.molgenis.security.permission.Permission
 
getUser(String) - Method in interface org.molgenis.security.user.MolgenisUserService
Returns the given user
getUser(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
 
getUserAdmin() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
 
getUserAdmin() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
 
getUserByEmail(String) - Method in interface org.molgenis.security.user.MolgenisUserService
Find a user by it's email.
getUserByEmail(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
 
getUserEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getUserEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getUserGroups(String) - Method in interface org.molgenis.security.user.MolgenisUserService
Returns the groups that the given user belongs to
getUserGroups(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
 
getUserId() - Method in class org.molgenis.security.permission.Permissions
 
getUserPermissions() - Method in class org.molgenis.security.permission.Permissions
 
getUserPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getUserPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
getUsers() - Method in interface org.molgenis.security.permission.PermissionManagerService
 
getUsers() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
giveUserEntityPermissions(SecurityContext, List<String>) - Method in class org.molgenis.security.permission.PermissionSystemService
 
GOOGLE_AUTHENTICATION_URL - Static variable in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
 
GoogleAuthenticationProcessingFilter - Class in org.molgenis.security.google
 
GoogleAuthenticationProcessingFilter(GooglePublicKeysManager, DataService, MolgenisUserDetailsService, AppSettings) - Constructor for class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
 
googleAuthenticationProcessingFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
googlePublicKeysManager() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 

H

handleEmailAlreadyExistsException(EmailAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
 
handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController
 
handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController
 
handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController
 
handleUsernameAlreadyExistsException(UsernameAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
 
hashCode() - Method in class org.molgenis.security.permission.Permission
 
HasPermissionDirective - Class in org.molgenis.security.freemarker
Directive that prints the body of the tag if the current user has permission on entity usage: <@hasPermission entityName='celiacsprue' permission="WRITE">write permission
HasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.HasPermissionDirective
 
hasPermissionOnEntity(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl
 
hasPermissionOnPlugin(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl
 
hasReadPermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController
 
hasWritePermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController
 

I

isRestRequest(HttpServletRequest) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
Checks if it is a rest request
iterator() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 

L

loadUserByUsername(String) - Method in class org.molgenis.security.user.MolgenisUserDetailsService
 

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker
 
MIN_PASSWORD_LENGTH - Static variable in interface org.molgenis.security.user.UserAccountService
 
MolgenisAnonymousAuthenticationFilter - Class in org.molgenis.security
Based on org.springframework.security.web.authentication.AnonymousAuthenticationFilter: Detects if there is no Authentication object in the SecurityContextHolder, and populates it with one if needed.
MolgenisAnonymousAuthenticationFilter(String, Object, UserDetailsService) - Constructor for class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
Creates a filter with a principal named "anonymousUser" and the single authority "ROLE_ANONYMOUS".
MolgenisChangePasswordFilter - Class in org.molgenis.security
 
MolgenisChangePasswordFilter(MolgenisUserService, RedirectStrategy) - Constructor for class org.molgenis.security.MolgenisChangePasswordFilter
 
MolgenisLoginController - Class in org.molgenis.security.login
 
MolgenisLoginController() - Constructor for class org.molgenis.security.login.MolgenisLoginController
 
MolgenisPermissionController - Class in org.molgenis.security.permission
 
MolgenisPermissionController(MolgenisPermissionService) - Constructor for class org.molgenis.security.permission.MolgenisPermissionController
 
molgenisPermissionService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
MolgenisPermissionServiceImpl - Class in org.molgenis.security.permission
 
MolgenisPermissionServiceImpl() - Constructor for class org.molgenis.security.permission.MolgenisPermissionServiceImpl
 
MolgenisRoleHierarchy - Class in org.molgenis.security
 
MolgenisRoleHierarchy() - Constructor for class org.molgenis.security.MolgenisRoleHierarchy
 
MolgenisSecurityWebAppDatabasePopulatorService - Interface in org.molgenis.security
 
MolgenisSecurityWebAppDatabasePopulatorServiceImpl - Class in org.molgenis.security
 
MolgenisSecurityWebAppDatabasePopulatorServiceImpl() - Constructor for class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
 
MolgenisUserDetailsChecker - Class in org.molgenis.security.user
Checks user details during the authentication process
MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker
 
MolgenisUserDetailsService - Class in org.molgenis.security.user
 
MolgenisUserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.MolgenisUserDetailsService
 
MolgenisUserException - Exception in org.molgenis.security.user
 
MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException
 
MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException
 
MolgenisUserService - Interface in org.molgenis.security.user
 
MolgenisUserServiceImpl - Class in org.molgenis.security.user
Manage user in groups
MolgenisUserServiceImpl(DataService) - Constructor for class org.molgenis.security.user.MolgenisUserServiceImpl
 
MolgenisWebAppSecurityConfig - Class in org.molgenis.security
 
MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig
 

N

NotHasPermissionDirective - Class in org.molgenis.security.freemarker
Directive that prints the body of the tag if the current user has no permission on entity usage: <@notHasPermission entity='celiacsprue' permission="WRITE">no write permission
NotHasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.NotHasPermissionDirective
 

O

org.molgenis.security - package org.molgenis.security
 
org.molgenis.security.account - package org.molgenis.security.account
 
org.molgenis.security.captcha - package org.molgenis.security.captcha
 
org.molgenis.security.freemarker - package org.molgenis.security.freemarker
 
org.molgenis.security.google - package org.molgenis.security.google
 
org.molgenis.security.login - package org.molgenis.security.login
 
org.molgenis.security.owned - package org.molgenis.security.owned
 
org.molgenis.security.permission - package org.molgenis.security.permission
 
org.molgenis.security.session - package org.molgenis.security.session
 
org.molgenis.security.token - package org.molgenis.security.token
 
org.molgenis.security.user - package org.molgenis.security.user
 
OwnedEntityRepositoryDecorator - Class in org.molgenis.security.owned
RepositoryDecorator that works on EntityMetaData that extends OwnedEntityMetaData.
OwnedEntityRepositoryDecorator(Repository) - Constructor for class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 

P

passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
Permission - Class in org.molgenis.security.permission
 
Permission() - Constructor for class org.molgenis.security.permission.Permission
 
PermissionDirective - Class in org.molgenis.security.freemarker
 
PermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.PermissionDirective
 
PermissionManagerService - Interface in org.molgenis.security.permission
Manage user and group permissions for plugins and entity classes
PermissionManagerServiceImpl - Class in org.molgenis.security.permission
 
PermissionManagerServiceImpl(DataService, MolgenisPluginRegistry, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.permission.PermissionManagerServiceImpl
 
Permissions - Class in org.molgenis.security.permission
 
Permissions() - Constructor for class org.molgenis.security.permission.Permissions
 
PermissionSystemService - Class in org.molgenis.security.permission
 
PermissionSystemService(DataService) - Constructor for class org.molgenis.security.permission.PermissionSystemService
 
populateDatabase(DataService, String) - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService
 
populateDatabase(DataService, String) - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl
 
preHandle(HttpServletRequest, HttpServletResponse, Object) - Method in class org.molgenis.security.CorsInterceptor
 

Q

query() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 

R

rebuildIndex() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
redirectStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController
 
removeCaptcha() - Method in class org.molgenis.security.captcha.CaptchaService
 
removeEntityListener(EntityListener) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
removeToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService
 
replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
replaceUserPluginPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService
 
replaceUserPluginPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl
 
resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController
 
resetPassword(String) - Method in interface org.molgenis.security.account.AccountService
 
resetPassword(String) - Method in class org.molgenis.security.account.AccountServiceImpl
 
RestAuthenticationToken - Class in org.molgenis.security.token
Holds the api token, passed by the client via a custom HTTP header
RestAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
 
RestAuthenticationToken(String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
 
roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
runAsAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 

S

SESSION_EXPIRED_SESSION_ATTR - Static variable in class org.molgenis.security.login.MolgenisLoginController
 
setAuthenticationDetailsSource(AuthenticationDetailsSource<HttpServletRequest, ?>) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter
 
setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest
 
setEntityIds(Map<String, String>) - Method in class org.molgenis.security.permission.Permissions
 
setGroup(String) - Method in class org.molgenis.security.permission.Permission
 
setGroupId(String) - Method in class org.molgenis.security.permission.Permissions
 
setPassword1(String) - Method in class org.molgenis.security.account.ChangePasswordForm
 
setPassword2(String) - Method in class org.molgenis.security.account.ChangePasswordForm
 
setType(String) - Method in class org.molgenis.security.permission.Permission
 
setUserId(String) - Method in class org.molgenis.security.permission.Permissions
 
sort() - Method in class org.molgenis.security.permission.Permissions
 
stream(Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
supports(Class<?>) - Method in class org.molgenis.security.token.TokenAuthenticationProvider
 

T

TOKEN_HEADER - Static variable in class org.molgenis.security.token.TokenExtractor
 
TOKEN_PARAMETER - Static variable in class org.molgenis.security.token.TokenExtractor
 
tokenAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
TokenAuthenticationFilter - Class in org.molgenis.security.token
Servlet filter that checks the httprequest for a molgenis security token and if valid logs the user in, else returns a 401
TokenAuthenticationFilter(AuthenticationProvider) - Constructor for class org.molgenis.security.token.TokenAuthenticationFilter
 
tokenAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
TokenAuthenticationProvider - Class in org.molgenis.security.token
AuthenticationProvider that uses the TokenService and expects a RestAuthenticationToken
TokenAuthenticationProvider(TokenService) - Constructor for class org.molgenis.security.token.TokenAuthenticationProvider
 
TokenExtractor - Class in org.molgenis.security.token
Get a molgenis authentication token from a HttpServletRequest
TokenExtractor() - Constructor for class org.molgenis.security.token.TokenExtractor
 
TokenGenerator - Class in org.molgenis.security.token
Generates a secure token
TokenGenerator() - Constructor for class org.molgenis.security.token.TokenGenerator
 
tokenService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
toString() - Method in class org.molgenis.security.permission.Permission
 

U

update(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
update(Stream<? extends Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator
 
update(MolgenisUser) - Method in interface org.molgenis.security.user.MolgenisUserService
Update user
update(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl
 
updateCurrentUser(MolgenisUser) - Method in interface org.molgenis.security.user.UserAccountService
Update the currently logged in user
updateCurrentUser(MolgenisUser) - Method in class org.molgenis.security.user.UserAccountServiceImpl
 
URI - Static variable in class org.molgenis.security.account.AccountController
 
UserAccountService - Interface in org.molgenis.security.user
Manage account of the current user
UserAccountServiceImpl - Class in org.molgenis.security.user
 
UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl
 
userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
 
UsernameAlreadyExistsException - Exception in org.molgenis.security.account
 
UsernameAlreadyExistsException() - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
 
UsernameAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
 
UsernameAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
 
UsernameAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
 
UsernameAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException
 

V

validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
 
validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService
Validates a captcha answer.
validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
 
validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService
Validates the password of the current logged in user
validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl
 
valueOf(String) - Static method in enum org.molgenis.security.account.ActivationMode
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.molgenis.security.account.ActivationMode
Returns an array containing the constants of this enum type, in the order they are declared.

W

WebAppSecurityInitializer - Class in org.molgenis.security
 
WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer
 
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