A C D E F G H I J K L M N O P Q R S T U V W

A

AccountController - Class in org.molgenis.security.account

AccountController() - Constructor for class org.molgenis.security.account.AccountController

AccountService - Interface in org.molgenis.security.account

AccountServiceImpl - Class in org.molgenis.security.account

AccountServiceImpl() - Constructor for class org.molgenis.security.account.AccountServiceImpl

activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController

activateUser(String) - Method in interface org.molgenis.security.account.AccountService

Activate a registered user

activateUser(String) - Method in class org.molgenis.security.account.AccountServiceImpl

activation(UserManagerController.Activation) - Method in class org.molgenis.security.usermanager.UserManagerController

ACTIVATIONCODE - Static variable in class org.molgenis.auth.MolgenisUser

ActivationMode - Enum in org.molgenis.security.account

ActivationResponse() - Constructor for class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

ACTIVE - Static variable in class org.molgenis.auth.MolgenisGroup

ACTIVE - Static variable in class org.molgenis.auth.MolgenisUser

add(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator

add(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator

addGroupPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addHierarchyPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

ADDRESS - Static variable in class org.molgenis.auth.MolgenisUser

addUserPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addUserToGroup(String, String) - Method in interface org.molgenis.security.usermanager.UserManagerService

addUserToGroup(String, String) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

AFFILIATION - Static variable in class org.molgenis.auth.MolgenisUser

afterPropertiesSet() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

aggregate(AggregateQuery) - Method in class org.molgenis.security.user.MolgenisUserDecorator

AjaxAwareLoginUrlAuthenticationEntryPoint - Class in org.molgenis.security

AjaxAwareLoginUrlAuthenticationEntryPoint() - Constructor for class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint

AjaxAwareLoginUrlAuthenticationEntryPoint(String) - Constructor for class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint

ALL_USER_GROUP - Static variable in interface org.molgenis.security.account.AccountService

anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

authenticate(Authentication) - Method in class org.molgenis.security.token.TokenAuthenticationProvider

authenticationEntryPoint() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

Authority - Interface in org.molgenis.auth

Authority: .

C

CaptchaController - Class in org.molgenis.security.captcha

CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController

CaptchaException - Exception in org.molgenis.security.captcha

CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException

CaptchaRequest - Class in org.molgenis.security.captcha

CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest

CaptchaService - Class in org.molgenis.security.captcha

CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService

CHANGE_PASSWORD_URI - Static variable in class org.molgenis.security.account.AccountController

changeGroupMembership(UserManagerController.GroupMembership) - Method in class org.molgenis.security.usermanager.UserManagerController

CHANGEPASSWORD - Static variable in class org.molgenis.auth.MolgenisUser

changePassword(ChangePasswordForm, HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.account.AccountController

changePassword(String, String) - Method in interface org.molgenis.security.account.AccountService

changePassword(String, String) - Method in class org.molgenis.security.account.AccountServiceImpl

changePasswordFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

ChangePasswordForm - Class in org.molgenis.security.account

ChangePasswordForm() - Constructor for class org.molgenis.security.account.ChangePasswordForm

check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker

CITY - Static variable in class org.molgenis.auth.MolgenisUser

clearCache() - Method in class org.molgenis.security.user.MolgenisUserDecorator

close() - Method in class org.molgenis.security.user.MolgenisUserDecorator

commence(HttpServletRequest, HttpServletResponse, AuthenticationException) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint

configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

consumeCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService

Validates and consumes a captcha.

CorsFilter - Class in org.molgenis.security

Filter to enable Cross-origin resource sharing (CORS)

CorsFilter() - Constructor for class org.molgenis.security.CorsFilter

CorsInterceptor - Class in org.molgenis.security

CorsInterceptor() - Constructor for class org.molgenis.security.CorsInterceptor

count() - Method in class org.molgenis.security.user.MolgenisUserDecorator

count(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator

COUNTRY - Static variable in class org.molgenis.auth.MolgenisUser

createAnonymousUserAuthorities() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

createAuthentication(HttpServletRequest) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService

Creates a Captcha and stores it in the session.

createUser(MolgenisUser, String) - Method in interface org.molgenis.security.account.AccountService

createUser(MolgenisUser, String) - Method in class org.molgenis.security.account.AccountServiceImpl

CREATIONDATE - Static variable in class org.molgenis.security.token.MolgenisToken

D

DataServiceTokenService - Class in org.molgenis.security.token

TokensService implementation that uses the DataService

DataServiceTokenService(TokenGenerator, DataService, UserDetailsService) - Constructor for class org.molgenis.security.token.DataServiceTokenService

delete(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator

delete(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator

deleteAll() - Method in class org.molgenis.security.user.MolgenisUserDecorator

deleteById(Object) - Method in class org.molgenis.security.user.MolgenisUserDecorator

deleteById(Iterable<Object>) - Method in class org.molgenis.security.user.MolgenisUserDecorator

DEPARTMENT - Static variable in class org.molgenis.auth.MolgenisUser

DESCRIPTION - Static variable in class org.molgenis.security.token.MolgenisToken

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisChangePasswordFilter

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.token.TokenAuthenticationFilter

doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.CorsFilter

E

EMAIL - Static variable in class org.molgenis.auth.MolgenisUser

ENTITY_NAME - Static variable in class org.molgenis.auth.GroupAuthority

ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisGroup

ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisGroupMember

ENTITY_NAME - Static variable in class org.molgenis.auth.MolgenisUser

ENTITY_NAME - Static variable in class org.molgenis.auth.UserAuthority

ENTITY_NAME - Static variable in class org.molgenis.security.token.MolgenisToken

equals(Object) - Method in class org.molgenis.auth.GroupAuthority

equals(Object) - Method in class org.molgenis.auth.MolgenisGroup

equals(Object) - Method in class org.molgenis.auth.MolgenisGroupMember

equals(Object) - Method in class org.molgenis.auth.MolgenisUser

equals(Object) - Method in class org.molgenis.auth.UserAuthority

equals(Object) - Method in class org.molgenis.security.permission.Permission

equals(Object) - Method in class org.molgenis.security.token.MolgenisToken

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.HasPermissionDirective

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.NotHasPermissionDirective

execute(Environment, Map, TemplateModel[], TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective

EXPIRATIONDATE - Static variable in class org.molgenis.security.token.MolgenisToken

F

FAX - Static variable in class org.molgenis.auth.MolgenisUser

findAll(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator

findAll(Iterable<Object>) - Method in class org.molgenis.security.user.MolgenisUserDecorator

findOne(Query) - Method in class org.molgenis.security.user.MolgenisUserDecorator

findOne(Object) - Method in class org.molgenis.security.user.MolgenisUserDecorator

findUserByToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService

Find a user by a security token

findUserByToken(String) - Method in interface org.molgenis.security.token.TokenService

Find a user by a security token

FIRSTNAME - Static variable in class org.molgenis.auth.MolgenisUser

flush() - Method in class org.molgenis.security.user.MolgenisUserDecorator

from(String, ActivationMode) - Static method in enum org.molgenis.security.account.ActivationMode

G

generateAndStoreToken(String, String) - Method in class org.molgenis.security.token.DataServiceTokenService

Generates a token and associates it with a user.

generateAndStoreToken(String, String) - Method in interface org.molgenis.security.token.TokenService

Generates a token and associates it with a user.

generateToken() - Method in class org.molgenis.security.token.TokenGenerator

get(String) - Method in class org.molgenis.auth.GroupAuthority

Generic getter.

get(String) - Method in class org.molgenis.auth.MolgenisGroup

Generic getter.

get(String) - Method in class org.molgenis.auth.MolgenisGroupMember

Generic getter.

get(String) - Method in class org.molgenis.auth.MolgenisUser

Generic getter.

get(String) - Method in class org.molgenis.auth.UserAuthority

Generic getter.

get(String) - Method in class org.molgenis.security.token.MolgenisToken

Generic getter.

getActivationCode() - Method in class org.molgenis.auth.MolgenisUser

Get the Used as alternative authentication mechanism to verify user email and/or if user has lost password..

getActivationMode() - Method in interface org.molgenis.security.account.AccountService

getActivationMode() - Method in class org.molgenis.security.account.AccountServiceImpl

getActive() - Method in class org.molgenis.auth.MolgenisGroup

Get the Boolean to indicate whether this group is in use..

getActive() - Method in class org.molgenis.auth.MolgenisUser

Get the Boolean to indicate if this account can be used to login.

getActive() - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

getAddress() - Method in class org.molgenis.auth.MolgenisUser

Get the The address of the Contact..

getAffiliation() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getAllMolgenisGroups() - Method in interface org.molgenis.security.usermanager.UserManagerService

getAllMolgenisGroups() - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getAllMolgenisUsers() - Method in interface org.molgenis.security.usermanager.UserManagerService

getAllMolgenisUsers() - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getAllUsersGroup() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService

getAllUsersGroup() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl

getAnonymousUser() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService

getAnonymousUser() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl

getAttributeNames() - Method in class org.molgenis.auth.GroupAuthority

getAttributeNames() - Method in class org.molgenis.auth.MolgenisGroup

getAttributeNames() - Method in class org.molgenis.auth.MolgenisGroupMember

getAttributeNames() - Method in class org.molgenis.auth.MolgenisUser

getAttributeNames() - Method in class org.molgenis.auth.UserAuthority

getAttributeNames() - Method in class org.molgenis.security.token.MolgenisToken

getAuthorities() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getCapabilities() - Method in class org.molgenis.security.user.MolgenisUserDecorator

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest

getChangePassword() - Method in class org.molgenis.auth.MolgenisUser

Get the If true the user must first change his password before he can proceed.

getChangePasswordForm() - Method in class org.molgenis.security.account.AccountController

getCity() - Method in class org.molgenis.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getCountry() - Method in class org.molgenis.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getCreationDate() - Method in class org.molgenis.security.token.MolgenisToken

Get the .

getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService

Returns the currently logged in user

getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl

getCurrentUserGroups() - Method in interface org.molgenis.security.user.UserAccountService

Returns the groups to which the currently logged in user belongs

getCurrentUserGroups() - Method in class org.molgenis.security.user.UserAccountServiceImpl

getDepartment() - Method in class org.molgenis.auth.MolgenisUser

Get the Added from the old definition of MolgenisUser.

getDescription() - Method in class org.molgenis.security.token.MolgenisToken

Get the .

getEmail() - Method in class org.molgenis.auth.MolgenisUser

Get the The email address of the Contact..

getEntityClassIds() - Method in interface org.molgenis.security.permission.PermissionManagerService

getEntityClassIds() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getEntityIds() - Method in class org.molgenis.security.permission.Permissions

getEntityMetaData() - Method in class org.molgenis.auth.GroupAuthority

getEntityMetaData() - Method in class org.molgenis.auth.MolgenisGroup

getEntityMetaData() - Method in class org.molgenis.auth.MolgenisGroupMember

getEntityMetaData() - Method in class org.molgenis.auth.MolgenisUser

getEntityMetaData() - Method in class org.molgenis.auth.UserAuthority

getEntityMetaData() - Method in class org.molgenis.security.token.MolgenisToken

getEntityMetaData() - Method in class org.molgenis.security.user.MolgenisUserDecorator

getEntityName() - Method in class org.molgenis.auth.GroupAuthority

getEntityName() - Method in class org.molgenis.auth.MolgenisGroup

getEntityName() - Method in class org.molgenis.auth.MolgenisGroupMember

getEntityName() - Method in class org.molgenis.auth.MolgenisUser

getEntityName() - Method in class org.molgenis.auth.UserAuthority

getEntityName() - Method in class org.molgenis.security.token.MolgenisToken

getExpirationDate() - Method in class org.molgenis.security.token.MolgenisToken

Get the When expiration date is null it will never expire.

getFax() - Method in class org.molgenis.auth.MolgenisUser

Get the The fax number of the Contact..

getFirstName() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getFullName() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

getGroup() - Method in class org.molgenis.security.permission.Permission

getGroupEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerController

getGroupEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroupId() - Method in class org.molgenis.security.permission.Permissions

getGroupId() - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

getGroupPermissions() - Method in class org.molgenis.security.permission.Permissions

getGroupPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerController

getGroupPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroups() - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroups() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroupsWhereUserIsMember(String) - Method in interface org.molgenis.security.usermanager.UserManagerService

getGroupsWhereUserIsMember(String) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getGroupsWhereUserIsNotMember(String) - Method in interface org.molgenis.security.usermanager.UserManagerService

getGroupsWhereUserIsNotMember(String) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

getHierarchyPermissionMap() - Method in class org.molgenis.security.permission.Permissions

getId() - Method in class org.molgenis.auth.GroupAuthority

Get the .

getId() - Method in class org.molgenis.auth.MolgenisGroup

Get the .

getId() - Method in class org.molgenis.auth.MolgenisGroupMember

Get the .

getId() - Method in class org.molgenis.auth.MolgenisUser

Get the automatically generated internal id, only for internal use..

getId() - Method in class org.molgenis.auth.UserAuthority

Get the .

getId() - Method in class org.molgenis.security.token.MolgenisToken

Get the .

getId() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

getId() - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

getId() - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

getIdValue() - Method in class org.molgenis.auth.GroupAuthority

getIdValue() - Method in class org.molgenis.auth.MolgenisGroup

getIdValue() - Method in class org.molgenis.auth.MolgenisGroupMember

getIdValue() - Method in class org.molgenis.auth.MolgenisUser

getIdValue() - Method in class org.molgenis.auth.UserAuthority

getIdValue() - Method in class org.molgenis.security.token.MolgenisToken

getLastName() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getLoginErrorPage(Model) - Method in class org.molgenis.security.login.MolgenisLoginController

getLoginForm() - Method in class org.molgenis.security.account.AccountController

getLoginPage(Model) - Method in class org.molgenis.security.login.MolgenisLoginController

getMember() - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException

getMiddleNames() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getMolgenisGroup() - Method in class org.molgenis.auth.GroupAuthority

Get the .

getMolgenisGroup() - Method in class org.molgenis.auth.MolgenisGroupMember

Get the .

getMolgenisUser() - Method in class org.molgenis.auth.MolgenisGroupMember

Get the .

getMolgenisUser() - Method in class org.molgenis.auth.UserAuthority

Get the .

getMolgenisUser() - Method in class org.molgenis.security.token.MolgenisToken

Get the .

getName() - Method in class org.molgenis.auth.MolgenisGroup

Get the .

getName() - Method in class org.molgenis.security.user.MolgenisUserDecorator

getPassword() - Method in class org.molgenis.auth.MolgenisUser

Get the big fixme: password type.

getPassword1() - Method in class org.molgenis.security.account.ChangePasswordForm

getPassword2() - Method in class org.molgenis.security.account.ChangePasswordForm

getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController

getPhone() - Method in class org.molgenis.auth.MolgenisUser

Get the The telephone number of the Contact including the suitable area codes..

getPlugins() - Method in interface org.molgenis.security.permission.PermissionManagerService

getPlugins() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getPrincipal() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.security.MolgenisRoleHierarchy

getRegisterForm() - Method in class org.molgenis.security.account.AccountController

getRole() - Method in interface org.molgenis.auth.Authority

getRole() - Method in class org.molgenis.auth.GroupAuthority

Get the .

getRole() - Method in class org.molgenis.auth.MolgenisUser

Get the Indicate role of the contact, e.g.

getRole() - Method in class org.molgenis.auth.UserAuthority

Get the .

getSuEmailAddresses() - Method in interface org.molgenis.security.user.MolgenisUserService

Returns e-mail addresses of super users

getSuEmailAddresses() - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

getSuperuser() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getTitle() - Method in class org.molgenis.auth.MolgenisUser

Get the An academic title, e.g.

getToken() - Method in class org.molgenis.security.token.MolgenisToken

Get the .

getToken() - Method in class org.molgenis.security.token.RestAuthenticationToken

getToken(HttpServletRequest) - Static method in class org.molgenis.security.token.TokenExtractor

getTollFreePhone() - Method in class org.molgenis.auth.MolgenisUser

Get the A toll free phone number for the Contact, including suitable area codes..

getType() - Method in class org.molgenis.security.permission.Permission

getType() - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

getType() - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

getUser(String) - Method in interface org.molgenis.security.user.MolgenisUserService

Returns the given user

getUser(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

getUserAdmin() - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService

getUserAdmin() - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl

getUserEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerController

getUserEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUserGroups(String) - Method in interface org.molgenis.security.user.MolgenisUserService

Returns the groups that the given user belongs to

getUserGroups(String) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

getUserId() - Method in class org.molgenis.security.permission.Permissions

getUserId() - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

getUserId() - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembershipResponse

getUsername() - Method in class org.molgenis.auth.MolgenisUser

Get the .

getUsername() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

getUserPermissions() - Method in class org.molgenis.security.permission.Permissions

getUserPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerController

getUserPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUsers() - Method in interface org.molgenis.security.permission.PermissionManagerService

getUsers() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUsersMemberInGroup(String) - Method in interface org.molgenis.security.usermanager.UserManagerService

getUsersMemberInGroup(String) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

giveUserEntityAndMenuPermissions(SecurityContext, List<String>) - Method in class org.molgenis.security.permission.PermissionSystemService

GroupAuthority - Class in org.molgenis.auth

GroupAuthority: .

GroupAuthority() - Constructor for class org.molgenis.auth.GroupAuthority

GroupAuthorityMetaData - Class in org.molgenis.auth

GroupAuthorityMetaData() - Constructor for class org.molgenis.auth.GroupAuthorityMetaData

GroupAuthorityRepository - Class in org.molgenis.auth

GroupAuthorityRepository(QueryResolver) - Constructor for class org.molgenis.auth.GroupAuthorityRepository

GroupAuthorityRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.GroupAuthorityRepository

For testing purposes

GroupMembership() - Constructor for class org.molgenis.security.usermanager.UserManagerController.GroupMembership

GroupMembershipResponse() - Constructor for class org.molgenis.security.usermanager.UserManagerController.GroupMembershipResponse

H

handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController

handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController

handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController

handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.permission.PermissionManagerController

hashCode() - Method in class org.molgenis.auth.GroupAuthority

hashCode() - Method in class org.molgenis.auth.MolgenisGroup

hashCode() - Method in class org.molgenis.auth.MolgenisGroupMember

hashCode() - Method in class org.molgenis.auth.MolgenisUser

hashCode() - Method in class org.molgenis.auth.UserAuthority

hashCode() - Method in class org.molgenis.security.permission.Permission

hashCode() - Method in class org.molgenis.security.token.MolgenisToken

HasPermissionDirective - Class in org.molgenis.security.freemarker

Directive that prints the body of the tag if the current user has permission on entity usage: <@hasPermission entityName='celiacsprue' permission="WRITE">write permission

HasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.HasPermissionDirective

hasPermissionOnEntity(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl

hasPermissionOnPlugin(String, Permission) - Method in class org.molgenis.security.permission.MolgenisPermissionServiceImpl

hasWritePermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController

I

ID - Static variable in class org.molgenis.auth.GroupAuthority

ID - Static variable in class org.molgenis.auth.MolgenisGroup

ID - Static variable in class org.molgenis.auth.MolgenisGroupMember

ID - Static variable in class org.molgenis.auth.MolgenisUser

ID - Static variable in class org.molgenis.auth.UserAuthority

ID - Static variable in class org.molgenis.security.log.LogManagerController

ID - Static variable in class org.molgenis.security.token.MolgenisToken

ID - Static variable in class org.molgenis.security.user.UserAccountController

init(Model) - Method in class org.molgenis.security.log.LogManagerController

init(Model) - Method in class org.molgenis.security.permission.PermissionManagerController

init(Model) - Method in class org.molgenis.security.usermanager.UserManagerController

isActive() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

isGroupMember(String) - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

isRestRequest(HttpServletRequest) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint

Checks if it is a rest request

isSelfRegistrationEnabled() - Method in interface org.molgenis.security.account.AccountService

isSelfRegistrationEnabled() - Method in class org.molgenis.security.account.AccountServiceImpl

isSuccess() - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

isSuccess() - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembershipResponse

isSuperuser() - Method in class org.molgenis.security.usermanager.MolgenisUserViewData

iterator() - Method in class org.molgenis.security.user.MolgenisUserDecorator

J

JDBCMetaDatabase - Class in org.molgenis

This class is an in memory representation of the contents of your *_db.xml file Utility of this class is to allow for dynamic querying and/or user interfacing for example within a query tool or a security module.

JDBCMetaDatabase() - Constructor for class org.molgenis.JDBCMetaDatabase

K

KEY_PLUGIN_AUTH_ACTIVATIONMODE - Static variable in interface org.molgenis.security.account.AccountService

KEY_PLUGIN_AUTH_ENABLE_SELFREGISTRATION - Static variable in interface org.molgenis.security.account.AccountService

L

LASTNAME - Static variable in class org.molgenis.auth.MolgenisUser

loadUserByUsername(String) - Method in class org.molgenis.security.user.MolgenisUserDetailsService

LogManagerController - Class in org.molgenis.security.log

LogManagerController() - Constructor for class org.molgenis.security.log.LogManagerController

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker

MIDDLENAMES - Static variable in class org.molgenis.auth.MolgenisUser

MIN_PASSWORD_LENGTH - Static variable in class org.molgenis.security.user.UserAccountController

MolgenisAnonymousAuthenticationFilter - Class in org.molgenis.security

Based on org.springframework.security.web.authentication.AnonymousAuthenticationFilter: Detects if there is no Authentication object in the SecurityContextHolder, and populates it with one if needed.

MolgenisAnonymousAuthenticationFilter(String, Object, UserDetailsService) - Constructor for class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

Creates a filter with a principal named "anonymousUser" and the single authority "ROLE_ANONYMOUS".

MolgenisChangePasswordFilter - Class in org.molgenis.security

MolgenisChangePasswordFilter(MolgenisUserService, RedirectStrategy) - Constructor for class org.molgenis.security.MolgenisChangePasswordFilter

MOLGENISGROUP - Static variable in class org.molgenis.auth.GroupAuthority

MolgenisGroup - Class in org.molgenis.auth

MolgenisGroup: .

MolgenisGroup() - Constructor for class org.molgenis.auth.MolgenisGroup

MOLGENISGROUP - Static variable in class org.molgenis.auth.MolgenisGroupMember

MolgenisGroupMember - Class in org.molgenis.auth

MolgenisGroupMember: .

MolgenisGroupMember() - Constructor for class org.molgenis.auth.MolgenisGroupMember

MolgenisGroupMemberMetaData - Class in org.molgenis.auth

MolgenisGroupMemberMetaData() - Constructor for class org.molgenis.auth.MolgenisGroupMemberMetaData

MolgenisGroupMemberRepository - Class in org.molgenis.auth

MolgenisGroupMemberRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupMemberRepository

MolgenisGroupMemberRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupMemberRepository

For testing purposes

MolgenisGroupMetaData - Class in org.molgenis.auth

MolgenisGroupMetaData() - Constructor for class org.molgenis.auth.MolgenisGroupMetaData

MolgenisGroupRepository - Class in org.molgenis.auth

MolgenisGroupRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupRepository

MolgenisGroupRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisGroupRepository

For testing purposes

MolgenisLoginController - Class in org.molgenis.security.login

MolgenisLoginController(ResourceFingerprintRegistry) - Constructor for class org.molgenis.security.login.MolgenisLoginController

MolgenisPermissionController - Class in org.molgenis.security.permission

MolgenisPermissionController(MolgenisPermissionService) - Constructor for class org.molgenis.security.permission.MolgenisPermissionController

molgenisPermissionService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

MolgenisPermissionServiceImpl - Class in org.molgenis.security.permission

MolgenisPermissionServiceImpl() - Constructor for class org.molgenis.security.permission.MolgenisPermissionServiceImpl

MolgenisRoleHierarchy - Class in org.molgenis.security

MolgenisRoleHierarchy() - Constructor for class org.molgenis.security.MolgenisRoleHierarchy

MolgenisSecurityWebAppDatabasePopulatorService - Interface in org.molgenis.security

MolgenisSecurityWebAppDatabasePopulatorServiceImpl - Class in org.molgenis.security

MolgenisSecurityWebAppDatabasePopulatorServiceImpl() - Constructor for class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl

MolgenisToken - Class in org.molgenis.security.token

MolgenisToken: .

MolgenisToken() - Constructor for class org.molgenis.security.token.MolgenisToken

MolgenisTokenMetaData - Class in org.molgenis.security.token

MolgenisTokenMetaData() - Constructor for class org.molgenis.security.token.MolgenisTokenMetaData

MolgenisTokenRepository - Class in org.molgenis.security.token

MolgenisTokenRepository(QueryResolver) - Constructor for class org.molgenis.security.token.MolgenisTokenRepository

MolgenisTokenRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.security.token.MolgenisTokenRepository

For testing purposes

MOLGENISUSER - Static variable in class org.molgenis.auth.MolgenisGroupMember

MolgenisUser - Class in org.molgenis.auth

MolgenisUser: Anyone who can login.

MolgenisUser() - Constructor for class org.molgenis.auth.MolgenisUser

MOLGENISUSER - Static variable in class org.molgenis.auth.UserAuthority

MOLGENISUSER - Static variable in class org.molgenis.security.token.MolgenisToken

MolgenisUserDecorator - Class in org.molgenis.security.user

MolgenisUserDecorator(Repository) - Constructor for class org.molgenis.security.user.MolgenisUserDecorator

MolgenisUserDetailsChecker - Class in org.molgenis.security.user

Checks user details during the authentication process

MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker

MolgenisUserDetailsService - Class in org.molgenis.security.user

MolgenisUserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.MolgenisUserDetailsService

MolgenisUserException - Exception in org.molgenis.security.user

MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException

MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException

MolgenisUserMetaData - Class in org.molgenis.auth

MolgenisUserMetaData() - Constructor for class org.molgenis.auth.MolgenisUserMetaData

MolgenisUserRepository - Class in org.molgenis.auth

MolgenisUserRepository(QueryResolver) - Constructor for class org.molgenis.auth.MolgenisUserRepository

MolgenisUserRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.MolgenisUserRepository

For testing purposes

MolgenisUserService - Interface in org.molgenis.security.user

MolgenisUserServiceImpl - Class in org.molgenis.security.user

Manage user in groups

MolgenisUserServiceImpl(DataService) - Constructor for class org.molgenis.security.user.MolgenisUserServiceImpl

MolgenisUserViewData - Class in org.molgenis.security.usermanager

MolgenisWebAppSecurityConfig - Class in org.molgenis.security

MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig

N

NAME - Static variable in class org.molgenis.auth.MolgenisGroup

NotHasPermissionDirective - Class in org.molgenis.security.freemarker

Directive that prints the body of the tag if the current user has no permission on entity usage: <@notHasPermission entity='celiacsprue' permission="WRITE">no write permission

NotHasPermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.NotHasPermissionDirective

O

org.molgenis - package org.molgenis

org.molgenis.auth - package org.molgenis.auth

org.molgenis.security - package org.molgenis.security

org.molgenis.security.account - package org.molgenis.security.account

org.molgenis.security.captcha - package org.molgenis.security.captcha

org.molgenis.security.freemarker - package org.molgenis.security.freemarker

org.molgenis.security.log - package org.molgenis.security.log

org.molgenis.security.login - package org.molgenis.security.login

org.molgenis.security.permission - package org.molgenis.security.permission

org.molgenis.security.token - package org.molgenis.security.token

org.molgenis.security.user - package org.molgenis.security.user

org.molgenis.security.usermanager - package org.molgenis.security.usermanager

P

PASSWORD_ - Static variable in class org.molgenis.auth.MolgenisUser

passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

Permission - Class in org.molgenis.security.permission

Permission() - Constructor for class org.molgenis.security.permission.Permission

PermissionDirective - Class in org.molgenis.security.freemarker

PermissionDirective(MolgenisPermissionService) - Constructor for class org.molgenis.security.freemarker.PermissionDirective

PermissionManagerController - Class in org.molgenis.security.permission

PermissionManagerController(PermissionManagerService) - Constructor for class org.molgenis.security.permission.PermissionManagerController

PermissionManagerService - Interface in org.molgenis.security.permission

Manage user and group permissions for plugins and entity classes

PermissionManagerServiceImpl - Class in org.molgenis.security.permission

PermissionManagerServiceImpl(DataService, MolgenisPluginRegistry, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.permission.PermissionManagerServiceImpl

Permissions - Class in org.molgenis.security.permission

Permissions() - Constructor for class org.molgenis.security.permission.Permissions

PermissionSystemService - Class in org.molgenis.security.permission

PermissionSystemService(DataService) - Constructor for class org.molgenis.security.permission.PermissionSystemService

PHONE - Static variable in class org.molgenis.auth.MolgenisUser

populateDatabase(DataService, String) - Method in interface org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorService

populateDatabase(DataService, String) - Method in class org.molgenis.security.MolgenisSecurityWebAppDatabasePopulatorServiceImpl

preHandle(HttpServletRequest, HttpServletResponse, Object) - Method in class org.molgenis.security.CorsInterceptor

Q

query() - Method in class org.molgenis.security.user.MolgenisUserDecorator

R

redirectStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController

removeToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService

removeToken(String) - Method in interface org.molgenis.security.token.TokenService

Remove a token from the store

removeUserFromGroup(String, String) - Method in interface org.molgenis.security.usermanager.UserManagerService

removeUserFromGroup(String, String) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserPluginPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserPluginPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

resetLoggers() - Method in class org.molgenis.security.log.LogManagerController

resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController

resetPassword(String) - Method in interface org.molgenis.security.account.AccountService

resetPassword(String) - Method in class org.molgenis.security.account.AccountServiceImpl

RestAuthenticationToken - Class in org.molgenis.security.token

Holds the api token, passed by the client via a custom HTTP header

RestAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken

RestAuthenticationToken(String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken

ROLE - Static variable in class org.molgenis.auth.GroupAuthority

ROLE - Static variable in class org.molgenis.auth.MolgenisUser

ROLE - Static variable in class org.molgenis.auth.UserAuthority

roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

S

set(Entity) - Method in class org.molgenis.auth.GroupAuthority

set(Entity, boolean) - Method in class org.molgenis.auth.GroupAuthority

set(String, Object) - Method in class org.molgenis.auth.GroupAuthority

set(Entity) - Method in class org.molgenis.auth.MolgenisGroup

set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisGroup

set(String, Object) - Method in class org.molgenis.auth.MolgenisGroup

set(Entity) - Method in class org.molgenis.auth.MolgenisGroupMember

set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisGroupMember

set(String, Object) - Method in class org.molgenis.auth.MolgenisGroupMember

set(Entity) - Method in class org.molgenis.auth.MolgenisUser

set(Entity, boolean) - Method in class org.molgenis.auth.MolgenisUser

set(String, Object) - Method in class org.molgenis.auth.MolgenisUser

set(Entity) - Method in class org.molgenis.auth.UserAuthority

set(Entity, boolean) - Method in class org.molgenis.auth.UserAuthority

set(String, Object) - Method in class org.molgenis.auth.UserAuthority

set(Entity) - Method in class org.molgenis.security.token.MolgenisToken

set(Entity, boolean) - Method in class org.molgenis.security.token.MolgenisToken

set(String, Object) - Method in class org.molgenis.security.token.MolgenisToken

setActivationCode(String) - Method in class org.molgenis.auth.MolgenisUser

Set the Used as alternative authentication mechanism to verify user email and/or if user has lost password..

setActivationGroup(String, Boolean) - Method in interface org.molgenis.security.usermanager.UserManagerService

setActivationGroup(String, Boolean) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

setActivationUser(String, Boolean) - Method in interface org.molgenis.security.usermanager.UserManagerService

setActivationUser(String, Boolean) - Method in class org.molgenis.security.usermanager.UserManagerServiceImpl

setActive(Boolean) - Method in class org.molgenis.auth.MolgenisGroup

Set the Boolean to indicate whether this group is in use..

setActive(Boolean) - Method in class org.molgenis.auth.MolgenisUser

Set the Boolean to indicate if this account can be used to login.

setActive(Boolean) - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

setAddress(String) - Method in class org.molgenis.auth.MolgenisUser

Set the The address of the Contact..

setAffiliation(String) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setAuthenticationDetailsSource(AuthenticationDetailsSource<HttpServletRequest, ?>) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest

setChangePassword(Boolean) - Method in class org.molgenis.auth.MolgenisUser

Set the If true the user must first change his password before he can proceed.

setCity(String) - Method in class org.molgenis.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setCountry(String) - Method in class org.molgenis.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setCreationDate(Date) - Method in class org.molgenis.security.token.MolgenisToken

Set the .

setDepartment(String) - Method in class org.molgenis.auth.MolgenisUser

Set the Added from the old definition of MolgenisUser.

setDescription(String) - Method in class org.molgenis.security.token.MolgenisToken

Set the .

setEmail(String) - Method in class org.molgenis.auth.MolgenisUser

Set the The email address of the Contact..

setEntityIds(Map<String, String>) - Method in class org.molgenis.security.permission.Permissions

setExpirationDate(Date) - Method in class org.molgenis.security.token.MolgenisToken

Set the When expiration date is null it will never expire.

setFax(String) - Method in class org.molgenis.auth.MolgenisUser

Set the The fax number of the Contact..

setFirstName(String) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setGroup(String) - Method in class org.molgenis.security.permission.Permission

setGroupId(String) - Method in class org.molgenis.security.permission.Permissions

setGroupId(String) - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

setId(String) - Method in class org.molgenis.auth.GroupAuthority

Set the .

setId(String) - Method in class org.molgenis.auth.MolgenisGroup

Set the .

setId(String) - Method in class org.molgenis.auth.MolgenisGroupMember

Set the .

setId(String) - Method in class org.molgenis.auth.MolgenisUser

Set the automatically generated internal id, only for internal use..

setId(String) - Method in class org.molgenis.auth.UserAuthority

Set the .

setId(String) - Method in class org.molgenis.security.token.MolgenisToken

Set the .

setId(String) - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

setId(String) - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

setLastName(String) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setMember(Boolean) - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

setMiddleNames(String) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.auth.GroupAuthority

Set the .

setMolgenisGroup(MolgenisGroup) - Method in class org.molgenis.auth.MolgenisGroupMember

Set the .

setMolgenisUser(MolgenisUser) - Method in class org.molgenis.auth.MolgenisGroupMember

Set the .

setMolgenisUser(MolgenisUser) - Method in class org.molgenis.auth.UserAuthority

Set the .

setMolgenisUser(MolgenisUser) - Method in class org.molgenis.security.token.MolgenisToken

Set the .

setName(String) - Method in class org.molgenis.auth.MolgenisGroup

Set the .

setPassword(String) - Method in class org.molgenis.auth.MolgenisUser

Set the big fixme: password type.

setPassword1(String) - Method in class org.molgenis.security.account.ChangePasswordForm

setPassword2(String) - Method in class org.molgenis.security.account.ChangePasswordForm

setPhone(String) - Method in class org.molgenis.auth.MolgenisUser

Set the The telephone number of the Contact including the suitable area codes..

setRole(String) - Method in interface org.molgenis.auth.Authority

setRole(String) - Method in class org.molgenis.auth.GroupAuthority

Set the .

setRole(String) - Method in class org.molgenis.auth.MolgenisUser

Set the Indicate role of the contact, e.g.

setRole(String) - Method in class org.molgenis.auth.UserAuthority

Set the .

setSuccess(boolean) - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

setSuccess(boolean) - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembershipResponse

setSuperuser(Boolean) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setTitle(String) - Method in class org.molgenis.auth.MolgenisUser

Set the An academic title, e.g.

setToken(String) - Method in class org.molgenis.security.token.MolgenisToken

Set the .

setTollFreePhone(String) - Method in class org.molgenis.auth.MolgenisUser

Set the A toll free phone number for the Contact, including suitable area codes..

setType(String) - Method in class org.molgenis.security.permission.Permission

setType(String) - Method in class org.molgenis.security.usermanager.UserManagerController.Activation

setType(String) - Method in class org.molgenis.security.usermanager.UserManagerController.ActivationResponse

setUserId(String) - Method in class org.molgenis.security.permission.Permissions

setUserId(String) - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembership

setUserId(String) - Method in class org.molgenis.security.usermanager.UserManagerController.GroupMembershipResponse

setUsername(String) - Method in class org.molgenis.auth.MolgenisUser

Set the .

setViewState(String, Model) - Method in class org.molgenis.security.usermanager.UserManagerController

showAccount(Model) - Method in class org.molgenis.security.user.UserAccountController

sort() - Method in class org.molgenis.security.permission.Permissions

SUPERUSER - Static variable in class org.molgenis.auth.MolgenisUser

supports(Class<?>) - Method in class org.molgenis.security.token.TokenAuthenticationProvider

T

TITLE - Static variable in class org.molgenis.auth.MolgenisUser

TOKEN - Static variable in class org.molgenis.security.token.MolgenisToken

TOKEN_HEADER - Static variable in class org.molgenis.security.token.TokenExtractor

TOKEN_PARAMETER - Static variable in class org.molgenis.security.token.TokenExtractor

tokenAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TokenAuthenticationFilter - Class in org.molgenis.security.token

Servlet filter that checks the httprequest for a molgenis security token and if valid logs the user in, else returns a 401

TokenAuthenticationFilter(AuthenticationProvider) - Constructor for class org.molgenis.security.token.TokenAuthenticationFilter

tokenAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TokenAuthenticationProvider - Class in org.molgenis.security.token

AuthenticationProvider that uses the TokenService and expects a RestAuthenticationToken

TokenAuthenticationProvider(TokenService) - Constructor for class org.molgenis.security.token.TokenAuthenticationProvider

TokenExtractor - Class in org.molgenis.security.token

Get a molgenis authentication token from a HttpServletRequest

TokenExtractor() - Constructor for class org.molgenis.security.token.TokenExtractor

TokenGenerator - Class in org.molgenis.security.token

Generates a secure token

TokenGenerator() - Constructor for class org.molgenis.security.token.TokenGenerator

tokenService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TokenService - Interface in org.molgenis.security.token

Store and remove molgenis security tokens

TOLLFREEPHONE - Static variable in class org.molgenis.auth.MolgenisUser

toString() - Method in class org.molgenis.auth.GroupAuthority

toString(boolean) - Method in class org.molgenis.auth.GroupAuthority

toString() - Method in class org.molgenis.auth.MolgenisGroup

toString(boolean) - Method in class org.molgenis.auth.MolgenisGroup

toString() - Method in class org.molgenis.auth.MolgenisGroupMember

toString(boolean) - Method in class org.molgenis.auth.MolgenisGroupMember

toString() - Method in class org.molgenis.auth.MolgenisUser

toString(boolean) - Method in class org.molgenis.auth.MolgenisUser

toString() - Method in class org.molgenis.auth.UserAuthority

toString(boolean) - Method in class org.molgenis.auth.UserAuthority

toString() - Method in class org.molgenis.security.permission.Permission

toString() - Method in class org.molgenis.security.token.MolgenisToken

toString(boolean) - Method in class org.molgenis.security.token.MolgenisToken

U

UnknownTokenException - Exception in org.molgenis.security.token

Exception thrown when an invalid token is encountered

UnknownTokenException(String) - Constructor for exception org.molgenis.security.token.UnknownTokenException

UnknownTokenException(String, Throwable) - Constructor for exception org.molgenis.security.token.UnknownTokenException

update(Entity) - Method in class org.molgenis.security.user.MolgenisUserDecorator

update(Iterable<? extends Entity>) - Method in class org.molgenis.security.user.MolgenisUserDecorator

update(MolgenisUser) - Method in interface org.molgenis.security.user.MolgenisUserService

Update user

update(MolgenisUser) - Method in class org.molgenis.security.user.MolgenisUserServiceImpl

updateAccount(UserAccountController.AccountUpdateRequest) - Method in class org.molgenis.security.user.UserAccountController

updateCurrentUser(MolgenisUser) - Method in interface org.molgenis.security.user.UserAccountService

Update the currently logged in user

updateCurrentUser(MolgenisUser) - Method in class org.molgenis.security.user.UserAccountServiceImpl

updateGroupEntityClassPermissions(String, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateGroupPluginPermissions(String, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateLogLevel(String, String) - Method in class org.molgenis.security.log.LogManagerController

updateUserEntityClassPermissions(String, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

updateUserPluginPermissions(String, WebRequest) - Method in class org.molgenis.security.permission.PermissionManagerController

URI - Static variable in class org.molgenis.security.account.AccountController

URI - Static variable in class org.molgenis.security.log.LogManagerController

URI - Static variable in class org.molgenis.security.permission.PermissionManagerController

URI - Static variable in class org.molgenis.security.user.UserAccountController

URI - Static variable in class org.molgenis.security.usermanager.UserManagerController

UserAccountController - Class in org.molgenis.security.user

UserAccountController(UserAccountService) - Constructor for class org.molgenis.security.user.UserAccountController

UserAccountService - Interface in org.molgenis.security.user

Manage account of the current user

UserAccountServiceImpl - Class in org.molgenis.security.user

UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl

UserAuthority - Class in org.molgenis.auth

UserAuthority: .

UserAuthority() - Constructor for class org.molgenis.auth.UserAuthority

UserAuthorityMetaData - Class in org.molgenis.auth

UserAuthorityMetaData() - Constructor for class org.molgenis.auth.UserAuthorityMetaData

UserAuthorityRepository - Class in org.molgenis.auth

UserAuthorityRepository(QueryResolver) - Constructor for class org.molgenis.auth.UserAuthorityRepository

UserAuthorityRepository(EntityManager, QueryResolver) - Constructor for class org.molgenis.auth.UserAuthorityRepository

For testing purposes

userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

UserManagerController - Class in org.molgenis.security.usermanager

UserManagerController(UserManagerService) - Constructor for class org.molgenis.security.usermanager.UserManagerController

UserManagerController.Activation - Class in org.molgenis.security.usermanager

UserManagerController.ActivationResponse - Class in org.molgenis.security.usermanager

UserManagerController.GroupMembership - Class in org.molgenis.security.usermanager

UserManagerController.GroupMembershipResponse - Class in org.molgenis.security.usermanager

UserManagerService - Interface in org.molgenis.security.usermanager

UserManagerServiceImpl - Class in org.molgenis.security.usermanager

Manage user in groups

UserManagerServiceImpl(DataService) - Constructor for class org.molgenis.security.usermanager.UserManagerServiceImpl

USERNAME - Static variable in class org.molgenis.auth.MolgenisUser

V

validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService

Validates a captcha answer.

validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService

Validates the password of the current logged in user

validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl

valueOf(String) - Static method in enum org.molgenis.security.account.ActivationMode

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.security.account.ActivationMode

Returns an array containing the constants of this enum type, in the order they are declared.

W

WebAppSecurityInitializer - Class in org.molgenis.security

WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer

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