A C D E F G H I L M N O P R S T U V W

A

AccountController - Class in org.molgenis.security.account

AccountController(AccountService, CaptchaService, RedirectStrategy, AuthenticationSettings, UserFactory) - Constructor for class org.molgenis.security.account.AccountController

AccountService - Interface in org.molgenis.security.account

AccountServiceImpl - Class in org.molgenis.security.account

AccountServiceImpl(DataService, MailSender, UserService, AppSettings, AuthenticationSettings, GroupMemberFactory, IdGenerator) - Constructor for class org.molgenis.security.account.AccountServiceImpl

activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController

activateUser(String) - Method in interface org.molgenis.security.account.AccountService

Activate a registered user

activateUser(String) - Method in class org.molgenis.security.account.AccountServiceImpl

activation(Model) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

addGroupPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addHierarchyPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

addUserPermission(String, Permission) - Method in class org.molgenis.security.permission.Permissions

afterPropertiesSet() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

AjaxAwareInvalidSessionStrategy - Class in org.molgenis.security

Same as SimpleRedirectInvalidSessionStrategy except for XMLHttpRequests in which case a status code is returned instead of redirection.

AjaxAwareLoginUrlAuthenticationEntryPoint - Class in org.molgenis.security

ALL_USER_GROUP - Static variable in interface org.molgenis.security.account.AccountService

anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

attemptAuthentication(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter

ATTRIBUTE_2FA_AUTHENTICATOR_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

ATTRIBUTE_2FA_RECOVER_MODE - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

ATTRIBUTE_2FA_SECRET_KEY - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

authenticate(Authentication) - Method in class org.molgenis.security.token.TokenAuthenticationProvider

authenticate(Authentication) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl

authenticate(Authentication) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl

authenticate(Model, String, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

AuthenticationAuthoritiesUpdater - Interface in org.molgenis.security.permission

Update an Authentication with new authorities.

AuthenticationAuthoritiesUpdaterImpl - Class in org.molgenis.security.permission

AuthenticationAuthoritiesUpdaterImpl() - Constructor for class org.molgenis.security.permission.AuthenticationAuthoritiesUpdaterImpl

authenticationEntryPoint() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

AuthenticationSettings - Interface in org.molgenis.security.settings

AuthenticationSettingsImpl - Class in org.molgenis.security.settings

AuthenticationSettingsImpl() - Constructor for class org.molgenis.security.settings.AuthenticationSettingsImpl

AuthenticationSettingsImpl.Meta - Class in org.molgenis.security.settings

C

CaptchaController - Class in org.molgenis.security.captcha

CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController

CaptchaException - Exception in org.molgenis.security.captcha

Deprecated.

use class that extends from CodedRuntimeException

CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException

Deprecated.

CaptchaRequest - Class in org.molgenis.security.captcha

CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest

CaptchaService - Class in org.molgenis.security.captcha

CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService

CHANGE_PASSWORD_URI - Static variable in class org.molgenis.security.account.AccountController

changePassword(ChangePasswordForm, HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.account.AccountController

changePassword(String, String) - Method in interface org.molgenis.security.account.AccountService

changePassword(String, String) - Method in class org.molgenis.security.account.AccountServiceImpl

changePasswordFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

ChangePasswordForm - Class in org.molgenis.security.account

ChangePasswordForm() - Constructor for class org.molgenis.security.account.ChangePasswordForm

check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker

CODE - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

commence(HttpServletRequest, HttpServletResponse, AuthenticationException) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint

configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configure(WebSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

configured(Model) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

CorsFilter - Class in org.molgenis.security

Filter to enable Cross-origin resource sharing (CORS)

CorsFilter() - Constructor for class org.molgenis.security.CorsFilter

CorsInterceptor - Class in org.molgenis.security

CorsInterceptor() - Constructor for class org.molgenis.security.CorsInterceptor

createAnonymousUserAuthorities() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

createAuthentication(HttpServletRequest) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService

Creates a Captcha and stores it in the session.

createUser(User, String) - Method in interface org.molgenis.security.account.AccountService

createUser(User, String) - Method in class org.molgenis.security.account.AccountServiceImpl

D

DataServiceTokenService - Class in org.molgenis.security.token

TokensService implementation that uses the DataService

DataServiceTokenService(TokenGenerator, DataService, UserDetailsService, TokenFactory) - Constructor for class org.molgenis.security.token.DataServiceTokenService

disableForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

Disable 2 factor authentication for the current user

disableForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisChangePasswordFilter

doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.token.TokenAuthenticationFilter

doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.CorsFilter

doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationFilter

E

EmailAlreadyExistsException - Exception in org.molgenis.security.account

Deprecated.

use class that extends from CodedRuntimeException

EmailAlreadyExistsException() - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException

Deprecated.

EmailAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException

Deprecated.

EmailAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException

Deprecated.

EmailAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException

Deprecated.

EmailAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException

Deprecated.

enableForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

enableForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

equals(Object) - Method in class org.molgenis.security.permission.Permission

equals(Object) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken

ERROR_MESSAGE_ATTRIBUTE - Static variable in class org.molgenis.security.login.MolgenisLoginController

ERROR_MESSAGE_DISABLED - Static variable in class org.molgenis.security.login.MolgenisLoginController

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.HasPermissionDirective

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.NotHasPermissionDirective

execute(Environment, Map, TemplateModel[], TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective

execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective

F

FAILED_LOGIN_ATTEMPTS - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

findUserByToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService

Find a user by a security token

fromLabel(String) - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting

G

generateAndStoreToken(String, String) - Method in class org.molgenis.security.token.DataServiceTokenService

Generates a token and associates it with a user.

generateRecoveryCodes() - Method in interface org.molgenis.security.twofactor.service.RecoveryService

Generates new recovery codes for the current user and deletes the old codes (if any).

generateRecoveryCodes() - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl

generateSecretKey() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

generateSecretKey() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

generateToken() - Method in class org.molgenis.security.token.TokenGenerator

getAuthenticatorURI(String) - Method in interface org.molgenis.security.twofactor.service.OtpService

Generate URI for use in authenticator apps

getAuthenticatorURI(String) - Method in class org.molgenis.security.twofactor.service.OtpServiceImpl

getAuthorities() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getAuthorities(User) - Method in class org.molgenis.security.user.UserDetailsService

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController

getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest

getChangePasswordForm() - Method in class org.molgenis.security.account.AccountController

getCode() - Method in class org.molgenis.security.twofactor.model.RecoveryCode

getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService

Returns the currently logged in user

getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl

getCurrentUserGroups() - Method in interface org.molgenis.security.user.UserAccountService

Returns the groups to which the currently logged in user belongs

getCurrentUserGroups() - Method in class org.molgenis.security.user.UserAccountServiceImpl

getEntityClassIds() - Method in interface org.molgenis.security.permission.PermissionManagerService

getEntityClassIds() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getEntityIds() - Method in class org.molgenis.security.permission.Permissions

getFailedLoginAttempts() - Method in class org.molgenis.security.twofactor.model.UserSecret

getGoogleAppClientId() - Method in interface org.molgenis.security.settings.AuthenticationSettings

getGoogleAppClientId() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

getGoogleSignIn() - Method in interface org.molgenis.security.settings.AuthenticationSettings

getGoogleSignIn() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

getGroup() - Method in class org.molgenis.security.permission.Permission

getGroupEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroupId() - Method in class org.molgenis.security.permission.Permissions

getGroupPermissions() - Method in class org.molgenis.security.permission.Permissions

getGroupPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroupPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getGroups() - Method in interface org.molgenis.security.permission.PermissionManagerService

getGroups() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getHierarchyPermissionMap() - Method in class org.molgenis.security.permission.Permissions

getId() - Method in class org.molgenis.security.twofactor.model.RecoveryCode

getId() - Method in class org.molgenis.security.twofactor.model.UserSecret

getLabel() - Method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting

getLastFailedAuthentication() - Method in class org.molgenis.security.twofactor.model.UserSecret

getLoginErrorPage(Model) - Method in class org.molgenis.security.login.MolgenisLoginController

getLoginErrorPage(Model, HttpServletRequest) - Method in class org.molgenis.security.login.MolgenisLoginController

getLoginForm() - Method in class org.molgenis.security.account.AccountController

getLoginPage() - Method in class org.molgenis.security.login.MolgenisLoginController

getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException

Deprecated.

getPassword1() - Method in class org.molgenis.security.account.ChangePasswordForm

getPassword2() - Method in class org.molgenis.security.account.ChangePasswordForm

getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController

getPlugins() - Method in interface org.molgenis.security.permission.PermissionManagerService

getPlugins() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getPrincipal() - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.security.MolgenisRoleHierarchy

getRecoveryCode() - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken

getRecoveryCodes() - Method in interface org.molgenis.security.twofactor.service.RecoveryService

Get the recovery codes (if any) of the current user.

getRecoveryCodes() - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl

getRegisterForm() - Method in class org.molgenis.security.account.AccountController

getSecret() - Method in class org.molgenis.security.twofactor.model.UserSecret

getSecretKey() - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken

getSecurityContext(String) - Method in interface org.molgenis.security.permission.SecurityContextRegistry

Returns the security context for the session with the given id.

getSecurityContext(String) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl

getSecurityContexts(Object) - Method in interface org.molgenis.security.permission.PrincipalSecurityContextRegistry

getSecurityContexts(Object) - Method in class org.molgenis.security.permission.PrincipalSecurityContextRegistryImpl

getSecurityContexts() - Method in interface org.molgenis.security.permission.SecurityContextRegistry

Returns a stream of all security contexts

getSecurityContexts() - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl

getSignUp() - Method in interface org.molgenis.security.settings.AuthenticationSettings

getSignUp() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

getSignUpModeration() - Method in interface org.molgenis.security.settings.AuthenticationSettings

getSignUpModeration() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

getToken() - Method in class org.molgenis.security.token.RestAuthenticationToken

getToken(HttpServletRequest) - Static method in class org.molgenis.security.token.TokenExtractor

getTwoFactorAuthentication() - Method in interface org.molgenis.security.settings.AuthenticationSettings

getTwoFactorAuthentication() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

getType() - Method in class org.molgenis.security.permission.Permission

getUserEntityClassPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserEntityClassPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUserId() - Method in class org.molgenis.security.permission.Permissions

getUserId() - Method in class org.molgenis.security.twofactor.model.RecoveryCode

getUserId() - Method in class org.molgenis.security.twofactor.model.UserSecret

getUserPermissions() - Method in class org.molgenis.security.permission.Permissions

getUserPluginPermissions(String) - Method in interface org.molgenis.security.permission.PermissionManagerService

getUserPluginPermissions(String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getUsers() - Method in interface org.molgenis.security.permission.PermissionManagerService

getUsers() - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

getVerificationCode() - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken

giveUserWriteMetaPermissions(EntityType) - Method in class org.molgenis.security.permission.PermissionSystemServiceImpl

giveUserWriteMetaPermissions(Collection<EntityType>) - Method in class org.molgenis.security.permission.PermissionSystemServiceImpl

GOOGLE_AUTHENTICATION_URL - Static variable in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter

GoogleAuthenticationProcessingFilter - Class in org.molgenis.security.google

GoogleAuthenticationProcessingFilter(GooglePublicKeysManager, DataService, UserDetailsService, AuthenticationSettings, UserFactory, GroupMemberFactory) - Constructor for class org.molgenis.security.google.GoogleAuthenticationProcessingFilter

googleAuthenticationProcessingFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

googlePublicKeysManager() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

H

handleEmailAlreadyExistsException(EmailAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController

handleHttpSessionCreatedEvent(HttpSessionCreatedEvent) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl

handleHttpSessionDestroyedEvent(HttpSessionDestroyedEvent) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl

handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController

handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController

handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController

handleUsernameAlreadyExistsException(UsernameAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController

hashCode() - Method in class org.molgenis.security.permission.Permission

hashCode() - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken

HasPermissionDirective - Class in org.molgenis.security.freemarker

Directive that prints the body of the tag if the current user has permission on entity

HasPermissionDirective(PermissionService) - Constructor for class org.molgenis.security.freemarker.HasPermissionDirective

hasPermissionOnEntityType(String, Permission) - Method in class org.molgenis.security.permission.PermissionServiceImpl

hasPermissionOnPlugin(String, Permission) - Method in class org.molgenis.security.permission.PermissionServiceImpl

hasReadPermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController

hasWritePermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController

httpSessionEventPublisher() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

I

ID - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

ID - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

init() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl.Meta

init() - Method in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

init() - Method in class org.molgenis.security.twofactor.model.UserSecretMetaData

invalidSessionStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

InvalidVerificationCodeException - Exception in org.molgenis.security.twofactor.exceptions

This exception is used to determine in the TwoFactorAuthenticationController what message should be thrown

InvalidVerificationCodeException(String) - Constructor for exception org.molgenis.security.twofactor.exceptions.InvalidVerificationCodeException

isConfiguredForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

Check if the user is 2 factor authentication ready.

isConfiguredForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

isVerificationCodeValidForUser(String) - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

Check verificationcode given by user from Google Authenticator

isVerificationCodeValidForUser(String) - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

L

LAST_FAILED_AUTHENICATION - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

loadUserByUsername(String) - Method in class org.molgenis.security.user.UserDetailsService

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker

Meta() - Constructor for class org.molgenis.security.settings.AuthenticationSettingsImpl.Meta

MIN_PASSWORD_LENGTH - Static variable in interface org.molgenis.security.user.UserAccountService

MolgenisAnonymousAuthenticationFilter - Class in org.molgenis.security

Based on org.springframework.security.web.authentication.AnonymousAuthenticationFilter:

MolgenisAnonymousAuthenticationFilter(String, Object, UserDetailsService) - Constructor for class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

Creates a filter with a principal named "anonymousUser" and the single authority "ROLE_ANONYMOUS".

MolgenisChangePasswordFilter - Class in org.molgenis.security

MolgenisChangePasswordFilter(UserService, RedirectStrategy) - Constructor for class org.molgenis.security.MolgenisChangePasswordFilter

MolgenisLoginController - Class in org.molgenis.security.login

MolgenisLoginController() - Constructor for class org.molgenis.security.login.MolgenisLoginController

MolgenisPermissionController - Class in org.molgenis.security.permission

MolgenisPermissionController(PermissionService) - Constructor for class org.molgenis.security.permission.MolgenisPermissionController

MolgenisRoleHierarchy - Class in org.molgenis.security

MolgenisRoleHierarchy() - Constructor for class org.molgenis.security.MolgenisRoleHierarchy

MolgenisUserDetailsChecker - Class in org.molgenis.security.user

Checks user details during the authentication process

MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker

MolgenisUserException - Exception in org.molgenis.security.user

Deprecated.

use class that extends from org.molgenis.i18n.CodedRuntimeException

MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException

Deprecated.

MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException

Deprecated.

MolgenisWebAppSecurityConfig - Class in org.molgenis.security

MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig

N

NotHasPermissionDirective - Class in org.molgenis.security.freemarker

Directive that prints the body of the tag if the current user has no permission on entity

NotHasPermissionDirective(PermissionService) - Constructor for class org.molgenis.security.freemarker.NotHasPermissionDirective

O

onInvalidSessionDetected(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.AjaxAwareInvalidSessionStrategy

org.molgenis.security - package org.molgenis.security

org.molgenis.security.account - package org.molgenis.security.account

org.molgenis.security.captcha - package org.molgenis.security.captcha

org.molgenis.security.freemarker - package org.molgenis.security.freemarker

org.molgenis.security.google - package org.molgenis.security.google

org.molgenis.security.login - package org.molgenis.security.login

org.molgenis.security.permission - package org.molgenis.security.permission

org.molgenis.security.settings - package org.molgenis.security.settings

org.molgenis.security.token - package org.molgenis.security.token

org.molgenis.security.twofactor - package org.molgenis.security.twofactor

org.molgenis.security.twofactor.auth - package org.molgenis.security.twofactor.auth

org.molgenis.security.twofactor.exceptions - package org.molgenis.security.twofactor.exceptions

org.molgenis.security.twofactor.model - package org.molgenis.security.twofactor.model

org.molgenis.security.twofactor.service - package org.molgenis.security.twofactor.service

org.molgenis.security.user - package org.molgenis.security.user

OtpService - Interface in org.molgenis.security.twofactor.service

OTPService is used to determine if the UserSecret matches the given validationcode.

OtpServiceImpl - Class in org.molgenis.security.twofactor.service

OtpServiceImpl(AppSettings) - Constructor for class org.molgenis.security.twofactor.service.OtpServiceImpl

P

PARAM_SESSION_EXPIRED - Static variable in class org.molgenis.security.login.MolgenisLoginController

passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

PATH_SEGMENT_APPS - Static variable in class org.molgenis.security.UriConstants

Permission - Class in org.molgenis.security.permission

Permission() - Constructor for class org.molgenis.security.permission.Permission

PermissionDirective - Class in org.molgenis.security.freemarker

PermissionDirective(PermissionService) - Constructor for class org.molgenis.security.freemarker.PermissionDirective

PermissionManagerService - Interface in org.molgenis.security.permission

Manage user and group permissions for plugins and entity classes

PermissionManagerServiceImpl - Class in org.molgenis.security.permission

PermissionManagerServiceImpl(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.permission.PermissionManagerServiceImpl

Permissions - Class in org.molgenis.security.permission

Permissions() - Constructor for class org.molgenis.security.permission.Permissions

PermissionServiceImpl - Class in org.molgenis.security.permission

PermissionServiceImpl() - Constructor for class org.molgenis.security.permission.PermissionServiceImpl

PermissionSystemServiceImpl - Class in org.molgenis.security.permission

PermissionSystemServiceImpl(UserService, UserAuthorityFactory, RoleHierarchy, DataService, PrincipalSecurityContextRegistry, AuthenticationAuthoritiesUpdater) - Constructor for class org.molgenis.security.permission.PermissionSystemServiceImpl

preHandle(HttpServletRequest, HttpServletResponse, Object) - Method in class org.molgenis.security.CorsInterceptor

PrincipalSecurityContextRegistry - Interface in org.molgenis.security.permission

PrincipalSecurityContextRegistryImpl - Class in org.molgenis.security.permission

R

recoverAccount(Model, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

RECOVERY_CODE - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

recoveryAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

RecoveryAuthenticationProvider - Interface in org.molgenis.security.twofactor.auth

Marker interface for RecoveryAuthenticationProvider when you do not implement is this way you get error messages like:

RecoveryAuthenticationProviderImpl - Class in org.molgenis.security.twofactor.auth

AuthenticationProvider that offers the possibility to authenticate users with a recovery code.

RecoveryAuthenticationProviderImpl(RecoveryService) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl

RecoveryAuthenticationToken - Class in org.molgenis.security.twofactor.auth

RecoveryAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken

RecoveryAuthenticationToken(String) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken

RecoveryCode - Class in org.molgenis.security.twofactor.model

RecoveryCode(Entity) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode

RecoveryCode(EntityType) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode

RecoveryCode(String, EntityType) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode

RecoveryCodeFactory - Class in org.molgenis.security.twofactor.model

RecoveryCodeMetadata - Class in org.molgenis.security.twofactor.model

RecoveryCodeMetadata(SecurityPackage) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

RecoveryService - Interface in org.molgenis.security.twofactor.service

Service that manages a user's recovery codes.

RecoveryServiceImpl - Class in org.molgenis.security.twofactor.service

RecoveryServiceImpl(DataService, UserService, RecoveryCodeFactory, IdGenerator) - Constructor for class org.molgenis.security.twofactor.service.RecoveryServiceImpl

redirectStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController

removeCaptcha() - Method in class org.molgenis.security.captcha.CaptchaService

removeToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService

replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupEntityClassPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceGroupPluginPermissions(List<GroupAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserEntityClassPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

replaceUserPluginPermissions(List<UserAuthority>, String) - Method in interface org.molgenis.security.permission.PermissionManagerService

replaceUserPluginPermissions(List<UserAuthority>, String) - Method in class org.molgenis.security.permission.PermissionManagerServiceImpl

resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController

resetPassword(String) - Method in interface org.molgenis.security.account.AccountService

resetPassword(String) - Method in class org.molgenis.security.account.AccountServiceImpl

resetSecretForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

resetSecretForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

resolveArgument(MethodParameter, ModelAndViewContainer, NativeWebRequest, WebDataBinderFactory) - Method in class org.molgenis.security.token.TokenExtractor

RestAuthenticationToken - Class in org.molgenis.security.token

Holds the api token, passed by the client via a custom HTTP header

RestAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken

RestAuthenticationToken(String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken

roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

runAsAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

S

saveSecretForUser(String) - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

Add generated userSecret to userdata.

saveSecretForUser(String) - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

SECRET - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

SecurityContextRegistry - Interface in org.molgenis.security.permission

SecurityContextRegistryImpl - Class in org.molgenis.security.permission

setAuthenticationDetailsSource(AuthenticationDetailsSource<HttpServletRequest, ?>) - Method in class org.molgenis.security.MolgenisAnonymousAuthenticationFilter

setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest

setCode(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode

setEntityIds(Map<String, String>) - Method in class org.molgenis.security.permission.Permissions

setFailedLoginAttempts(int) - Method in class org.molgenis.security.twofactor.model.UserSecret

setGoogleAppClientId(String) - Method in interface org.molgenis.security.settings.AuthenticationSettings

setGoogleAppClientId(String) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

setGoogleSignIn(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings

setGoogleSignIn(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

setGroup(String) - Method in class org.molgenis.security.permission.Permission

setGroupId(String) - Method in class org.molgenis.security.permission.Permissions

setId(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode

setId(String) - Method in class org.molgenis.security.twofactor.model.UserSecret

setLastFailedAuthentication(Instant) - Method in class org.molgenis.security.twofactor.model.UserSecret

setPassword1(String) - Method in class org.molgenis.security.account.ChangePasswordForm

setPassword2(String) - Method in class org.molgenis.security.account.ChangePasswordForm

setSecret(String) - Method in class org.molgenis.security.twofactor.model.UserSecret

setSignUp(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings

setSignUp(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

setSignUpModeration(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings

setSignUpModeration(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

setTwoFactorAuthentication(TwoFactorAuthenticationSetting) - Method in interface org.molgenis.security.settings.AuthenticationSettings

setTwoFactorAuthentication(TwoFactorAuthenticationSetting) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl

setType(String) - Method in class org.molgenis.security.permission.Permission

setUserId(String) - Method in class org.molgenis.security.permission.Permissions

setUserId(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode

setUserId(String) - Method in class org.molgenis.security.twofactor.model.UserSecret

sort() - Method in class org.molgenis.security.permission.Permissions

supports(Class<?>) - Method in class org.molgenis.security.token.TokenAuthenticationProvider

supports(Class<?>) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl

supports(Class<?>) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl

supportsParameter(MethodParameter) - Method in class org.molgenis.security.token.TokenExtractor

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TOKEN_HEADER - Static variable in class org.molgenis.security.token.TokenExtractor

TOKEN_PARAMETER - Static variable in class org.molgenis.security.token.TokenExtractor

tokenAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TokenAuthenticationFilter - Class in org.molgenis.security.token

Servlet filter that checks the httprequest for a molgenis security token and if valid logs the user in, else returns a 401

TokenAuthenticationFilter(AuthenticationProvider) - Constructor for class org.molgenis.security.token.TokenAuthenticationFilter

tokenAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TokenAuthenticationProvider - Class in org.molgenis.security.token

AuthenticationProvider that uses the TokenService and expects a RestAuthenticationToken

TokenAuthenticationProvider(TokenService) - Constructor for class org.molgenis.security.token.TokenAuthenticationProvider

TokenExtractor - Class in org.molgenis.security.token

Gets the molgenis authentication token from a HttpServletRequest

TokenExtractor() - Constructor for class org.molgenis.security.token.TokenExtractor

TokenGenerator - Class in org.molgenis.security.token

Generates a secure token

TokenGenerator() - Constructor for class org.molgenis.security.token.TokenGenerator

TokenParam - Annotation Type in org.molgenis.security.token

Annotation that you can use to bind a String parameter in a handler method to the molgenis token in the request.

tokenService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TooManyLoginAttemptsException - Exception in org.molgenis.security.twofactor.exceptions

TooManyLoginAttemptsException(String) - Constructor for exception org.molgenis.security.twofactor.exceptions.TooManyLoginAttemptsException

toString() - Method in class org.molgenis.security.permission.Permission

tryVerificationCode(String, String) - Method in interface org.molgenis.security.twofactor.service.OtpService

Use TOTP algorithm to verify validity of secret and verification code.

tryVerificationCode(String, String) - Method in class org.molgenis.security.twofactor.service.OtpServiceImpl

TWO_FACTOR_ACTIVATION_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

TWO_FACTOR_CONFIGURED_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

TwoFactorAuthenticationController - Class in org.molgenis.security.twofactor

TwoFactorAuthenticationController(TwoFactorAuthenticationProvider, TwoFactorAuthenticationService, RecoveryAuthenticationProvider, OtpService) - Constructor for class org.molgenis.security.twofactor.TwoFactorAuthenticationController

twoFactorAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TwoFactorAuthenticationFilter - Class in org.molgenis.security.twofactor.auth

TwoFactorAuthenticationFilter(AuthenticationSettings, TwoFactorAuthenticationService, RedirectStrategy, UserAccountService) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationFilter

twoFactorAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

TwoFactorAuthenticationProvider - Interface in org.molgenis.security.twofactor.auth

Marker interface for TwoFactorAuthenticationProvider when you do not implement is this way you get error messages like:

TwoFactorAuthenticationProviderImpl - Class in org.molgenis.security.twofactor.auth

AuthenticationProvider that uses the TwoFactorAuthenticationService and expects a TwoFactorAuthenticationToken

TwoFactorAuthenticationProviderImpl(TwoFactorAuthenticationService, OtpService, RecoveryService) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl

TwoFactorAuthenticationService - Interface in org.molgenis.security.twofactor.service

Service to use in TwoFactorAuthenticationFilter and TwoFactorAuthenticationController

TwoFactorAuthenticationServiceImpl - Class in org.molgenis.security.twofactor.service

TwoFactorAuthenticationServiceImpl(OtpService, DataService, UserService, IdGenerator, UserSecretFactory) - Constructor for class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

TwoFactorAuthenticationSetting - Enum in org.molgenis.security.twofactor.auth

You can have tw-factor-authentication in three different states in your system

TwoFactorAuthenticationToken - Class in org.molgenis.security.twofactor.auth

Holds the api token, passed by the client via a custom HTTP header

TwoFactorAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String, String) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken

TwoFactorAuthenticationToken(String, String) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken

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updateAuthentication(Authentication, List<GrantedAuthority>) - Method in interface org.molgenis.security.permission.AuthenticationAuthoritiesUpdater

Update an Authentication with new authorities.

updateAuthentication(Authentication, List<GrantedAuthority>) - Method in class org.molgenis.security.permission.AuthenticationAuthoritiesUpdaterImpl

updateCurrentUser(User) - Method in interface org.molgenis.security.user.UserAccountService

Update the currently logged in user

updateCurrentUser(User) - Method in class org.molgenis.security.user.UserAccountServiceImpl

URI - Static variable in class org.molgenis.security.account.AccountController

URI - Static variable in class org.molgenis.security.login.MolgenisLoginController

URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

UriConstants - Class in org.molgenis.security

URI constants used in security context

USER_ID - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata

USER_ID - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

USER_SECRET - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData

UserAccountService - Interface in org.molgenis.security.user

Manage account of the current user

UserAccountServiceImpl - Class in org.molgenis.security.user

UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl

userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

UserDetailsService - Class in org.molgenis.security.user

UserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.UserDetailsService

userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

useRecoveryCode(String) - Method in interface org.molgenis.security.twofactor.service.RecoveryService

Checks if a recovery code is valid for the current user and throws an exception if it is not.

useRecoveryCode(String) - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl

userIsBlocked() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService

userIsBlocked() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

UsernameAlreadyExistsException - Exception in org.molgenis.security.account

Deprecated.

use class that extends from CodedRuntimeException

UsernameAlreadyExistsException() - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

Deprecated.

UsernameAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

Deprecated.

UsernameAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

Deprecated.

UsernameAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

Deprecated.

UsernameAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException

Deprecated.

UserSecret - Class in org.molgenis.security.twofactor.model

UserSecret(Entity) - Constructor for class org.molgenis.security.twofactor.model.UserSecret

UserSecret(EntityType) - Constructor for class org.molgenis.security.twofactor.model.UserSecret

UserSecret(String, EntityType) - Constructor for class org.molgenis.security.twofactor.model.UserSecret

UserSecretFactory - Class in org.molgenis.security.twofactor.model

UserSecretMetaData - Class in org.molgenis.security.twofactor.model

User secret key for 2 factor authentication

UserSecretMetaData(SecurityPackage) - Constructor for class org.molgenis.security.twofactor.model.UserSecretMetaData

V

validate(Model, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController

validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService

Validates a captcha answer.

validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController

validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService

Validates the password of the current logged in user

validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl

valueOf(String) - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting

Returns an array containing the constants of this enum type, in the order they are declared.

W

WebAppSecurityInitializer - Class in org.molgenis.security

WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer

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