Index (security 7.0.0-RC2 API)

A B C D E F G H I L M N O P R S T U V W

A

AccountController - Class in org.molgenis.security.account
AccountController(AccountService, CaptchaService, RedirectStrategy, AuthenticationSettings, UserFactory) - Constructor for class org.molgenis.security.account.AccountController
AccountService - Interface in org.molgenis.security.account
AccountServiceImpl - Class in org.molgenis.security.account
aclAuthorizationStrategy() - Method in class org.springframework.security.acls.jdbc.AclConfig
aclCache() - Method in class org.springframework.security.acls.jdbc.AclConfig
AclCacheTransactionListener - Class in org.molgenis.security.acl
AclCacheTransactionListener(AclCache, MutableAclClassService) - Constructor for class org.molgenis.security.acl.AclCacheTransactionListener
aclCacheTransactionListener() - Method in class org.springframework.security.acls.jdbc.AclConfig
aclClassIdUtils() - Method in class org.springframework.security.acls.jdbc.AclConfig
AclConfig - Class in org.springframework.security.acls.jdbc: TODO move to org.molgenis sub-package once we upgraded to a spring-security-acl release with https://github.com/spring-projects/spring-security/issues/4814.
AclConfig(DataSource, TransactionManager) - Constructor for class org.springframework.security.acls.jdbc.AclConfig
aclPermissionEvaluator() - Method in class org.springframework.security.acls.jdbc.AclConfig
aclService() - Method in class org.springframework.security.acls.jdbc.AclConfig
activateUser(String, Model) - Method in class org.molgenis.security.account.AccountController
activateUser(String) - Method in interface org.molgenis.security.account.AccountService: Activate a registered user
activateUser(String) - Method in class org.molgenis.security.account.AccountServiceImpl
activation(Model) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
addGroupMember(String, String) - Static method in class org.molgenis.security.group.AddGroupMemberCommand
AddGroupMemberCommand - Class in org.molgenis.security.group
AddGroupMemberCommand() - Constructor for class org.molgenis.security.group.AddGroupMemberCommand
addMember(String, AddGroupMemberCommand) - Method in class org.molgenis.security.group.GroupRestController
AjaxAwareInvalidSessionStrategy - Class in org.molgenis.security: Same as SimpleRedirectInvalidSessionStrategy except for XMLHttpRequests in which case a status code is returned instead of redirection.
AjaxAwareLoginUrlAuthenticationEntryPoint - Class in org.molgenis.security
anonymousAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
anonymousAuthFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
attemptAuthentication(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
ATTRIBUTE_2FA_AUTHENTICATOR_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
ATTRIBUTE_2FA_RECOVER_MODE - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
ATTRIBUTE_2FA_SECRET_KEY - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
auditLogger() - Method in class org.springframework.security.acls.jdbc.AclConfig
authenticate(Authentication) - Method in class org.molgenis.security.token.TokenAuthenticationProvider
authenticate(Authentication) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl
authenticate(Authentication) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl
authenticate(Model, String, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
AuthenticationAuthoritiesUpdater - Interface in org.molgenis.security.permission: Update an Authentication with new authorities.
AuthenticationAuthoritiesUpdaterImpl - Class in org.molgenis.security.permission
AuthenticationAuthoritiesUpdaterImpl() - Constructor for class org.molgenis.security.permission.AuthenticationAuthoritiesUpdaterImpl
authenticationEntryPoint() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
authenticationManagerBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
AuthenticationSettings - Interface in org.molgenis.security.settings
AuthenticationSettingsImpl - Class in org.molgenis.security.settings
AuthenticationSettingsImpl() - Constructor for class org.molgenis.security.settings.AuthenticationSettingsImpl
AuthenticationSettingsImpl.Meta - Class in org.molgenis.security.settings

B

BitMaskPermissionGrantingStrategy - Class in org.molgenis.security.acl: Permission granting strategy similar to DefaultPermissionGrantingStrategy but uses a bitwise 'and' to compare permission masks.
BitMaskPermissionGrantingStrategy(AuditLogger) - Constructor for class org.molgenis.security.acl.BitMaskPermissionGrantingStrategy

C

CaptchaController - Class in org.molgenis.security.captcha
CaptchaController() - Constructor for class org.molgenis.security.captcha.CaptchaController
CaptchaException - Exception in org.molgenis.security.captcha: Deprecated.
use class that extends from CodedRuntimeException
CaptchaException(String) - Constructor for exception org.molgenis.security.captcha.CaptchaException: Deprecated.
CaptchaRequest - Class in org.molgenis.security.captcha
CaptchaRequest() - Constructor for class org.molgenis.security.captcha.CaptchaRequest
CaptchaService - Class in org.molgenis.security.captcha
CaptchaService() - Constructor for class org.molgenis.security.captcha.CaptchaService
CHANGE_PASSWORD_URI - Static variable in class org.molgenis.security.account.AccountController
changePassword(ChangePasswordForm, HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.account.AccountController
changePassword(String, String) - Method in interface org.molgenis.security.account.AccountService
changePassword(String, String) - Method in class org.molgenis.security.account.AccountServiceImpl
changePasswordFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
ChangePasswordForm - Class in org.molgenis.security.account
ChangePasswordForm() - Constructor for class org.molgenis.security.account.ChangePasswordForm
check(UserDetails) - Method in class org.molgenis.security.user.MolgenisUserDetailsChecker
clearCache() - Method in class org.molgenis.security.acl.MutableAclClassServiceImpl
CODE - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
commence(HttpServletRequest, HttpServletResponse, AuthenticationException) - Method in class org.molgenis.security.AjaxAwareLoginUrlAuthenticationEntryPoint
configure(HttpSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
configure(WebSecurity) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
configure(AuthenticationManagerBuilder) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
configured(Model) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
configureUrlAuthorization(ExpressionUrlAuthorizationConfigurer<HttpSecurity>.ExpressionInterceptUrlRegistry) - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
create(Set<String>, Multimap<String, String>) - Static method in class org.molgenis.security.permission.Permissions
create(String, UserDetails, Class<? extends Authentication>) - Method in class org.molgenis.security.token.RunAsUserTokenFactory
createAcl(ObjectIdentity) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService: Same as JdbcMutableAclService.createAcl(ObjectIdentity) except for duplicate key checking which is handled by by the database for performance reasons.
createAclClass(String, Class<?>) - Method in class org.molgenis.security.acl.MutableAclClassServiceImpl
createCaptcha(int, int) - Method in class org.molgenis.security.captcha.CaptchaService: Creates a Captcha and stores it in the session.
createGroup(GroupCommand) - Method in class org.molgenis.security.group.GroupRestController
createUser(User, String) - Method in interface org.molgenis.security.account.AccountService
createUser(User, String) - Method in class org.molgenis.security.account.AccountServiceImpl

D

DataServiceTokenService - Class in org.molgenis.security.token: TokensService implementation that uses the DataService
DataServiceTokenService(TokenGenerator, DataService, UserDetailsService, TokenFactory) - Constructor for class org.molgenis.security.token.DataServiceTokenService
DataSourceAclTablesPopulator - Class in org.molgenis.security.acl
DataSourceAclTablesPopulator(DataSource) - Constructor for class org.molgenis.security.acl.DataSourceAclTablesPopulator
deleteAcl(ObjectIdentity, boolean) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
deleteAclClass(String) - Method in class org.molgenis.security.acl.MutableAclClassServiceImpl
disableForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService: Disable 2 factor authentication for the current user
disableForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.MolgenisChangePasswordFilter
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class org.molgenis.security.token.TokenAuthenticationFilter
doFilterInternal(HttpServletRequest, HttpServletResponse, FilterChain) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationFilter

E

EmailAlreadyExistsException - Exception in org.molgenis.security.account: Deprecated.
use class that extends from CodedRuntimeException
EmailAlreadyExistsException() - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException: Deprecated.
EmailAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException: Deprecated.
EmailAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException: Deprecated.
EmailAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException: Deprecated.
EmailAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.EmailAlreadyExistsException: Deprecated.
enableForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService
enableForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
equals(Object) - Method in class org.molgenis.security.permission.Permission
equals(Object) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken
ERROR_MESSAGE_ATTRIBUTE - Static variable in class org.molgenis.security.login.MolgenisLoginController
ERROR_MESSAGE_DISABLED - Static variable in class org.molgenis.security.login.MolgenisLoginController
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.HasPermissionDirective
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.NotHasPermissionDirective
execute(Environment, Map, TemplateModel[], TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective
execute(boolean, Environment, TemplateDirectiveBody) - Method in class org.molgenis.security.freemarker.PermissionDirective

F

FAILED_LOGIN_ATTEMPTS - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
findChildren(ObjectIdentity) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
findUserByToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService: Find a user by a security token
fromLabel(String) - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting

G

generateAndStoreToken(String, String) - Method in class org.molgenis.security.token.DataServiceTokenService: Generates a token and associates it with a user.
generateRecoveryCodes() - Method in interface org.molgenis.security.twofactor.service.RecoveryService: Generates new recovery codes for the current user and deletes the old codes (if any).
generateRecoveryCodes() - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl
generateSecretKey() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService
generateSecretKey() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
generateToken() - Method in class org.molgenis.security.token.TokenGenerator
getAclClassTypes() - Method in class org.molgenis.security.acl.MutableAclClassServiceImpl
getAuthenticatorURI(String) - Method in interface org.molgenis.security.twofactor.service.OtpService: Generate URI for use in authenticator apps
getAuthenticatorURI(String) - Method in class org.molgenis.security.twofactor.service.OtpServiceImpl
getAuthorities(User) - Method in class org.molgenis.security.user.UserDetailsService
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaController
getCaptcha() - Method in class org.molgenis.security.captcha.CaptchaRequest
getChangePasswordForm() - Method in class org.molgenis.security.account.AccountController
getCode() - Method in class org.molgenis.security.twofactor.model.RecoveryCode
getCurrentUser() - Method in interface org.molgenis.security.user.UserAccountService: Returns the currently logged in user
getCurrentUser() - Method in class org.molgenis.security.user.UserAccountServiceImpl
getFailedLoginAttempts() - Method in class org.molgenis.security.twofactor.model.UserSecret
getGoogleAppClientId() - Method in interface org.molgenis.security.settings.AuthenticationSettings
getGoogleAppClientId() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
getGoogleSignIn() - Method in interface org.molgenis.security.settings.AuthenticationSettings
getGoogleSignIn() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
getGroupRoles(String) - Method in class org.molgenis.security.group.GroupRestController
getGroups() - Method in class org.molgenis.security.group.GroupRestController
getId() - Method in class org.molgenis.security.group.UserResponse
getId() - Method in class org.molgenis.security.twofactor.model.RecoveryCode
getId() - Method in class org.molgenis.security.twofactor.model.UserSecret
getIds() - Method in class org.molgenis.security.permission.Permissions
getLabel() - Method in class org.molgenis.security.group.GroupCommand
getLabel() - Method in class org.molgenis.security.group.GroupResponse
getLabel() - Method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting
getLastFailedAuthentication() - Method in class org.molgenis.security.twofactor.model.UserSecret
getLoginErrorPage(Model) - Method in class org.molgenis.security.login.MolgenisLoginController
getLoginErrorPage(Model, HttpServletRequest) - Method in class org.molgenis.security.login.MolgenisLoginController
getLoginForm() - Method in class org.molgenis.security.account.AccountController
getLoginPage() - Method in class org.molgenis.security.login.MolgenisLoginController
getMembers(String) - Method in class org.molgenis.security.group.GroupRestController
getMessage() - Method in exception org.molgenis.security.user.MolgenisUserException: Deprecated.
getName() - Method in class org.molgenis.security.group.GroupCommand
getName() - Method in class org.molgenis.security.group.GroupResponse
getPassword1() - Method in class org.molgenis.security.account.ChangePasswordForm
getPassword2() - Method in class org.molgenis.security.account.ChangePasswordForm
getPasswordResetForm() - Method in class org.molgenis.security.account.AccountController
getPermissions(String) - Method in class org.molgenis.security.group.GroupRestController
getPermissions() - Method in class org.molgenis.security.permission.Permissions
getPermissions(ObjectIdentity, Permission[]) - Method in class org.molgenis.security.permission.UserPermissionEvaluatorImpl
getRecoveryCode() - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken
getRecoveryCodes() - Method in interface org.molgenis.security.twofactor.service.RecoveryService: Get the recovery codes (if any) of the current user.
getRecoveryCodes() - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl
getRegisterForm() - Method in class org.molgenis.security.account.AccountController
getRole() - Method in class org.molgenis.security.group.GroupMemberResponse
getRole() - Method in class org.molgenis.security.permission.Permission
getRoleLabel() - Method in class org.molgenis.security.group.RoleResponse
getRoleName() - Method in class org.molgenis.security.group.AddGroupMemberCommand
getRoleName() - Method in class org.molgenis.security.group.RoleResponse
getRoleName() - Method in class org.molgenis.security.group.UpdateGroupMemberCommand
getSecret() - Method in class org.molgenis.security.twofactor.model.UserSecret
getSecretKey() - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken
getSecurityContext(String) - Method in interface org.molgenis.security.permission.SecurityContextRegistry: Returns the security context for the session with the given id.
getSecurityContext(String) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl
getSecurityContexts(Object) - Method in interface org.molgenis.security.permission.PrincipalSecurityContextRegistry
getSecurityContexts(Object) - Method in class org.molgenis.security.permission.PrincipalSecurityContextRegistryImpl
getSecurityContexts() - Method in interface org.molgenis.security.permission.SecurityContextRegistry: Returns a stream of all security contexts
getSecurityContexts() - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl
getSignUp() - Method in interface org.molgenis.security.settings.AuthenticationSettings
getSignUp() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
getSignUpModeration() - Method in interface org.molgenis.security.settings.AuthenticationSettings
getSignUpModeration() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
getToken() - Method in class org.molgenis.security.token.RestAuthenticationToken
getToken(HttpServletRequest) - Static method in class org.molgenis.security.token.TokenExtractor
getTwoFactorAuthentication() - Method in interface org.molgenis.security.settings.AuthenticationSettings
getTwoFactorAuthentication() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
getType() - Method in class org.molgenis.security.permission.Permission
getUser() - Method in class org.molgenis.security.group.GroupMemberResponse
getUserId() - Method in class org.molgenis.security.twofactor.model.RecoveryCode
getUserId() - Method in class org.molgenis.security.twofactor.model.UserSecret
getUsername() - Method in class org.molgenis.security.group.AddGroupMemberCommand
getUsername() - Method in class org.molgenis.security.group.UserResponse
getUsers() - Method in class org.molgenis.security.group.GroupRestController
getVerificationCode() - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken
giveUserWriteMetaPermissions(EntityType) - Method in class org.molgenis.security.permission.PermissionSystemServiceImpl: Deprecated.
giveUserWriteMetaPermissions(Collection<EntityType>) - Method in class org.molgenis.security.permission.PermissionSystemServiceImpl: Deprecated.
GOOGLE_AUTHENTICATION_URL - Static variable in class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
GoogleAuthenticationProcessingFilter - Class in org.molgenis.security.google
GoogleAuthenticationProcessingFilter(GooglePublicKeysManager, DataService, UserDetailsService, AuthenticationSettings, UserFactory) - Constructor for class org.molgenis.security.google.GoogleAuthenticationProcessingFilter
googleAuthenticationProcessingFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
googlePublicKeysManager() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
GroupCommand - Class in org.molgenis.security.group
GroupCommand() - Constructor for class org.molgenis.security.group.GroupCommand
GroupMemberResponse - Class in org.molgenis.security.group
GroupMemberResponse() - Constructor for class org.molgenis.security.group.GroupMemberResponse
GroupResponse - Class in org.molgenis.security.group
GroupResponse() - Constructor for class org.molgenis.security.group.GroupResponse
GroupRestController - Class in org.molgenis.security.group

H

handleEmailAlreadyExistsException(EmailAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
handleHttpSessionCreatedEvent(HttpSessionCreatedEvent) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl
handleHttpSessionDestroyedEvent(HttpSessionDestroyedEvent) - Method in class org.molgenis.security.permission.SecurityContextRegistryImpl
handleMolgenisDataException(MolgenisDataException) - Method in class org.molgenis.security.account.AccountController
handleMolgenisUserException(MolgenisUserException) - Method in class org.molgenis.security.account.AccountController
handleRuntimeException(RuntimeException) - Method in class org.molgenis.security.account.AccountController
handleUsernameAlreadyExistsException(UsernameAlreadyExistsException) - Method in class org.molgenis.security.account.AccountController
hasAclClass(String) - Method in class org.molgenis.security.acl.MutableAclClassServiceImpl
hashCode() - Method in class org.molgenis.security.permission.Permission
hashCode() - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken
hasPermission(ObjectIdentity, Permission) - Method in class org.molgenis.security.permission.UserPermissionEvaluatorImpl
hasPermission(ObjectIdentity, List<Permission>) - Method in class org.molgenis.security.permission.UserPermissionEvaluatorImpl
HasPermissionDirective - Class in org.molgenis.security.freemarker: Directive that prints the body of the tag if the current user has Permission on entity
HasPermissionDirective(UserPermissionEvaluator) - Constructor for class org.molgenis.security.freemarker.HasPermissionDirective
hasReadPermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController
hasWritePermission(String) - Method in class org.molgenis.security.permission.MolgenisPermissionController
httpSessionEventPublisher() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig

I

ID - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
ID - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
init() - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl.Meta
init() - Method in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
init() - Method in class org.molgenis.security.twofactor.model.UserSecretMetaData
invalidSessionStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
InvalidVerificationCodeException - Exception in org.molgenis.security.twofactor.exceptions: This exception is used to determine in the TwoFactorAuthenticationController what message should be thrown
InvalidVerificationCodeException(String) - Constructor for exception org.molgenis.security.twofactor.exceptions.InvalidVerificationCodeException
isConfiguredForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService: Check if the user is 2 factor authentication ready.
isConfiguredForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
isGranted(Acl, List<Permission>, List<Sid>, boolean) - Method in class org.molgenis.security.acl.BitMaskPermissionGrantingStrategy
isVerificationCodeValidForUser(String) - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService: Check verificationcode given by user from Google Authenticator
isVerificationCodeValidForUser(String) - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl

L

LAST_FAILED_AUTHENICATION - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
loadUserByUsername(String) - Method in class org.molgenis.security.user.UserDetailsService
logIfNeeded(boolean, AccessControlEntry) - Method in class org.molgenis.security.NoOpAuditLogger
lookupStrategy() - Method in class org.springframework.security.acls.jdbc.AclConfig

M

messages - Variable in class org.molgenis.security.user.MolgenisUserDetailsChecker
Meta() - Constructor for class org.molgenis.security.settings.AuthenticationSettingsImpl.Meta
MIN_PASSWORD_LENGTH - Static variable in interface org.molgenis.security.user.UserAccountService
MolgenisChangePasswordFilter - Class in org.molgenis.security
MolgenisChangePasswordFilter(UserService, RedirectStrategy) - Constructor for class org.molgenis.security.MolgenisChangePasswordFilter
MolgenisLoginController - Class in org.molgenis.security.login
MolgenisLoginController() - Constructor for class org.molgenis.security.login.MolgenisLoginController
MolgenisPermissionController - Class in org.molgenis.security.permission
MolgenisPermissionController(UserPermissionEvaluator) - Constructor for class org.molgenis.security.permission.MolgenisPermissionController
MolgenisUserDetailsChecker - Class in org.molgenis.security.user: Checks user details during the authentication process
MolgenisUserDetailsChecker() - Constructor for class org.molgenis.security.user.MolgenisUserDetailsChecker
MolgenisUserException - Exception in org.molgenis.security.user: Deprecated.
use class that extends from org.molgenis.i18n.CodedRuntimeException
MolgenisUserException(String) - Constructor for exception org.molgenis.security.user.MolgenisUserException: Deprecated.
MolgenisUserException(Exception) - Constructor for exception org.molgenis.security.user.MolgenisUserException: Deprecated.
MolgenisWebAppSecurityConfig - Class in org.molgenis.security
MolgenisWebAppSecurityConfig() - Constructor for class org.molgenis.security.MolgenisWebAppSecurityConfig
mutableAclClassService() - Method in class org.springframework.security.acls.jdbc.AclConfig
MutableAclClassServiceImpl - Class in org.molgenis.security.acl
MutableAclClassServiceImpl(JdbcTemplate, AclCache) - Constructor for class org.molgenis.security.acl.MutableAclClassServiceImpl

N

NoOpAuditLogger - Class in org.molgenis.security: A no operation AuditLogger suitable for disabling audit logging.
NoOpAuditLogger() - Constructor for class org.molgenis.security.NoOpAuditLogger
NotHasPermissionDirective - Class in org.molgenis.security.freemarker: Directive that prints the body of the tag if the current user has no permission on entity
NotHasPermissionDirective(UserPermissionEvaluator) - Constructor for class org.molgenis.security.freemarker.NotHasPermissionDirective

O

onInvalidSessionDetected(HttpServletRequest, HttpServletResponse) - Method in class org.molgenis.security.AjaxAwareInvalidSessionStrategy
org.molgenis.security - package org.molgenis.security
org.molgenis.security.account - package org.molgenis.security.account
org.molgenis.security.acl - package org.molgenis.security.acl
org.molgenis.security.captcha - package org.molgenis.security.captcha
org.molgenis.security.freemarker - package org.molgenis.security.freemarker
org.molgenis.security.google - package org.molgenis.security.google
org.molgenis.security.group - package org.molgenis.security.group
org.molgenis.security.login - package org.molgenis.security.login
org.molgenis.security.permission - package org.molgenis.security.permission
org.molgenis.security.settings - package org.molgenis.security.settings
org.molgenis.security.token - package org.molgenis.security.token
org.molgenis.security.twofactor - package org.molgenis.security.twofactor
org.molgenis.security.twofactor.auth - package org.molgenis.security.twofactor.auth
org.molgenis.security.twofactor.exceptions - package org.molgenis.security.twofactor.exceptions
org.molgenis.security.twofactor.model - package org.molgenis.security.twofactor.model
org.molgenis.security.twofactor.service - package org.molgenis.security.twofactor.service
org.molgenis.security.user - package org.molgenis.security.user
org.springframework.security.acls.jdbc - package org.springframework.security.acls.jdbc
OtpService - Interface in org.molgenis.security.twofactor.service: OTPService is used to determine if the UserSecret matches the given validationcode.
OtpServiceImpl - Class in org.molgenis.security.twofactor.service
OtpServiceImpl(AppSettings) - Constructor for class org.molgenis.security.twofactor.service.OtpServiceImpl

P

PARAM_SESSION_EXPIRED - Static variable in class org.molgenis.security.login.MolgenisLoginController
passwordEncoder() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
PATH_SEGMENT_APPS - Static variable in class org.molgenis.security.UriConstants
Permission - Class in org.molgenis.security.permission
Permission() - Constructor for class org.molgenis.security.permission.Permission
PermissionDirective - Class in org.molgenis.security.freemarker
permissionGrantingStrategy() - Method in class org.springframework.security.acls.jdbc.AclConfig
Permissions - Class in org.molgenis.security.permission
Permissions() - Constructor for class org.molgenis.security.permission.Permissions
PermissionSystemServiceImpl - Class in org.molgenis.security.permission: Deprecated.
use MutableAclService
PermissionSystemServiceImpl(MutableAclService) - Constructor for class org.molgenis.security.permission.PermissionSystemServiceImpl: Deprecated.
populate() - Method in class org.molgenis.security.acl.DataSourceAclTablesPopulator
PrincipalSecurityContextRegistry - Interface in org.molgenis.security.permission
PrincipalSecurityContextRegistryImpl - Class in org.molgenis.security.permission

R

readAclById(ObjectIdentity, List<Sid>) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
readAclById(ObjectIdentity) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
readAclsById(List<ObjectIdentity>) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
readAclsById(List<ObjectIdentity>, List<Sid>) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
recoverAccount(Model, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
RECOVERY_CODE - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
recoveryAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
RecoveryAuthenticationProvider - Interface in org.molgenis.security.twofactor.auth: Marker interface for RecoveryAuthenticationProvider when you do not implement is this way you get error messages like:
RecoveryAuthenticationProviderImpl - Class in org.molgenis.security.twofactor.auth: AuthenticationProvider that offers the possibility to authenticate users with a recovery code.
RecoveryAuthenticationProviderImpl(RecoveryService) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl
RecoveryAuthenticationToken - Class in org.molgenis.security.twofactor.auth
RecoveryAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken
RecoveryAuthenticationToken(String) - Constructor for class org.molgenis.security.twofactor.auth.RecoveryAuthenticationToken
RecoveryCode - Class in org.molgenis.security.twofactor.model
RecoveryCode(Entity) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode
RecoveryCode(EntityType) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode
RecoveryCode(String, EntityType) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCode
RecoveryCodeFactory - Class in org.molgenis.security.twofactor.model
RecoveryCodeMetadata - Class in org.molgenis.security.twofactor.model
RecoveryCodeMetadata(SecurityPackage) - Constructor for class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
RecoveryService - Interface in org.molgenis.security.twofactor.service: Service that manages a user's recovery codes.
RecoveryServiceImpl - Class in org.molgenis.security.twofactor.service
RecoveryServiceImpl(DataService, UserService, RecoveryCodeFactory, IdGenerator) - Constructor for class org.molgenis.security.twofactor.service.RecoveryServiceImpl
redirectStrategy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
registerUser(RegisterRequest, CaptchaRequest, HttpServletRequest) - Method in class org.molgenis.security.account.AccountController
removeCaptcha() - Method in class org.molgenis.security.captcha.CaptchaService
removeMember(String, String) - Method in class org.molgenis.security.group.GroupRestController
removeToken(String) - Method in class org.molgenis.security.token.DataServiceTokenService
resetPassword(PasswordResetRequest) - Method in class org.molgenis.security.account.AccountController
resetPassword(String) - Method in interface org.molgenis.security.account.AccountService
resetPassword(String) - Method in class org.molgenis.security.account.AccountServiceImpl
resetSecretForUser() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService
resetSecretForUser() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
resolveArgument(MethodParameter, ModelAndViewContainer, NativeWebRequest, WebDataBinderFactory) - Method in class org.molgenis.security.token.TokenExtractor
RestAuthenticationToken - Class in org.molgenis.security.token: Holds the api token, passed by the client via a custom HTTP header
RestAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
RestAuthenticationToken(String) - Constructor for class org.molgenis.security.token.RestAuthenticationToken
roleHierarchy() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
roleHierarchyAuthoritiesMapper() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
roleHierarchyBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
RoleResponse - Class in org.molgenis.security.group
RoleResponse() - Constructor for class org.molgenis.security.group.RoleResponse
roleVoter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
rollbackTransaction(String) - Method in class org.molgenis.security.acl.AclCacheTransactionListener
runAsAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
RunAsUserTokenFactory - Class in org.molgenis.security.token
RunAsUserTokenFactory(UserDetailsChecker) - Constructor for class org.molgenis.security.token.RunAsUserTokenFactory

S

saveSecretForUser(String) - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService: Add generated userSecret to userdata.
saveSecretForUser(String) - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
SECRET - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
SecurityContextRegistry - Interface in org.molgenis.security.permission
SecurityContextRegistryImpl - Class in org.molgenis.security.permission
setCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaRequest
setCode(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode
setFailedLoginAttempts(int) - Method in class org.molgenis.security.twofactor.model.UserSecret
setGoogleAppClientId(String) - Method in interface org.molgenis.security.settings.AuthenticationSettings
setGoogleAppClientId(String) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
setGoogleSignIn(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings
setGoogleSignIn(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
setId(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode
setId(String) - Method in class org.molgenis.security.twofactor.model.UserSecret
setLastFailedAuthentication(Instant) - Method in class org.molgenis.security.twofactor.model.UserSecret
setPassword1(String) - Method in class org.molgenis.security.account.ChangePasswordForm
setPassword2(String) - Method in class org.molgenis.security.account.ChangePasswordForm
setRole(String) - Method in class org.molgenis.security.permission.Permission
setSecret(String) - Method in class org.molgenis.security.twofactor.model.UserSecret
setSignUp(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings
setSignUp(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
setSignUpModeration(boolean) - Method in interface org.molgenis.security.settings.AuthenticationSettings
setSignUpModeration(boolean) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
setTwoFactorAuthentication(TwoFactorAuthenticationSetting) - Method in interface org.molgenis.security.settings.AuthenticationSettings
setTwoFactorAuthentication(TwoFactorAuthenticationSetting) - Method in class org.molgenis.security.settings.AuthenticationSettingsImpl
setType(String) - Method in class org.molgenis.security.permission.Permission
setUserId(String) - Method in class org.molgenis.security.twofactor.model.RecoveryCode
setUserId(String) - Method in class org.molgenis.security.twofactor.model.UserSecret
supports(Class<?>) - Method in class org.molgenis.security.token.TokenAuthenticationProvider
supports(Class<?>) - Method in class org.molgenis.security.twofactor.auth.RecoveryAuthenticationProviderImpl
supports(Class<?>) - Method in class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl
supportsParameter(MethodParameter) - Method in class org.molgenis.security.token.TokenExtractor

T

TOKEN_HEADER - Static variable in class org.molgenis.security.token.TokenExtractor
TOKEN_PARAMETER - Static variable in class org.molgenis.security.token.TokenExtractor
tokenAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TokenAuthenticationFilter - Class in org.molgenis.security.token: Servlet filter that checks the httprequest for a molgenis security token and if valid logs the user in, else returns a 401
TokenAuthenticationFilter(AuthenticationProvider) - Constructor for class org.molgenis.security.token.TokenAuthenticationFilter
tokenAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TokenAuthenticationProvider - Class in org.molgenis.security.token: AuthenticationProvider that uses the TokenService and expects a RestAuthenticationToken
TokenAuthenticationProvider(TokenService, UserDetailsChecker) - Constructor for class org.molgenis.security.token.TokenAuthenticationProvider
TokenExtractor - Class in org.molgenis.security.token: Gets the molgenis authentication token from a HttpServletRequest
TokenExtractor() - Constructor for class org.molgenis.security.token.TokenExtractor
TokenGenerator - Class in org.molgenis.security.token: Generates a secure token
TokenGenerator() - Constructor for class org.molgenis.security.token.TokenGenerator
TokenParam - Annotation Type in org.molgenis.security.token: Annotation that you can use to bind a String parameter in a handler method to the molgenis token in the request.
tokenService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TooManyLoginAttemptsException - Exception in org.molgenis.security.twofactor.exceptions
TooManyLoginAttemptsException(String) - Constructor for exception org.molgenis.security.twofactor.exceptions.TooManyLoginAttemptsException
toString() - Method in class org.molgenis.security.permission.Permission
TransactionalJdbcMutableAclService - Class in org.molgenis.security.acl: Transactional JdbcMutableAclService.
TransactionalJdbcMutableAclService(DataSource, LookupStrategy, AclCache) - Constructor for class org.molgenis.security.acl.TransactionalJdbcMutableAclService
tryVerificationCode(String, String) - Method in interface org.molgenis.security.twofactor.service.OtpService: Use TOTP algorithm to verify validity of secret and verification code.
tryVerificationCode(String, String) - Method in class org.molgenis.security.twofactor.service.OtpServiceImpl
TWO_FACTOR_ACTIVATION_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
TWO_FACTOR_CONFIGURED_URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
TwoFactorAuthenticationController - Class in org.molgenis.security.twofactor
TwoFactorAuthenticationController(TwoFactorAuthenticationProvider, TwoFactorAuthenticationService, RecoveryAuthenticationProvider, OtpService) - Constructor for class org.molgenis.security.twofactor.TwoFactorAuthenticationController
twoFactorAuthenticationFilter() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TwoFactorAuthenticationFilter - Class in org.molgenis.security.twofactor.auth
TwoFactorAuthenticationFilter(AuthenticationSettings, TwoFactorAuthenticationService, RedirectStrategy, UserAccountService) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationFilter
twoFactorAuthenticationProvider() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
TwoFactorAuthenticationProvider - Interface in org.molgenis.security.twofactor.auth: Marker interface for TwoFactorAuthenticationProvider when you do not implement is this way you get error messages like:
TwoFactorAuthenticationProviderImpl - Class in org.molgenis.security.twofactor.auth: AuthenticationProvider that uses the TwoFactorAuthenticationService and expects a TwoFactorAuthenticationToken
TwoFactorAuthenticationProviderImpl(TwoFactorAuthenticationService, OtpService, RecoveryService) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationProviderImpl
TwoFactorAuthenticationService - Interface in org.molgenis.security.twofactor.service: Service to use in TwoFactorAuthenticationFilter and TwoFactorAuthenticationController
TwoFactorAuthenticationServiceImpl - Class in org.molgenis.security.twofactor.service
TwoFactorAuthenticationServiceImpl(OtpService, DataService, UserService, IdGenerator, UserSecretFactory) - Constructor for class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
TwoFactorAuthenticationSetting - Enum in org.molgenis.security.twofactor.auth: You can have tw-factor-authentication in three different states in your system
TwoFactorAuthenticationToken - Class in org.molgenis.security.twofactor.auth: Holds the api token, passed by the client via a custom HTTP header
TwoFactorAuthenticationToken(Object, Object, Collection<? extends GrantedAuthority>, String, String) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken
TwoFactorAuthenticationToken(String, String) - Constructor for class org.molgenis.security.twofactor.auth.TwoFactorAuthenticationToken

U

updateAcl(MutableAcl) - Method in class org.molgenis.security.acl.TransactionalJdbcMutableAclService
updateAuthentication(Authentication, List<GrantedAuthority>) - Method in interface org.molgenis.security.permission.AuthenticationAuthoritiesUpdater: Update an Authentication with new authorities.
updateAuthentication(Authentication, List<GrantedAuthority>) - Method in class org.molgenis.security.permission.AuthenticationAuthoritiesUpdaterImpl
updateCurrentUser(User) - Method in interface org.molgenis.security.user.UserAccountService: Update the currently logged in user
updateCurrentUser(User) - Method in class org.molgenis.security.user.UserAccountServiceImpl
updateGroupMember(String) - Static method in class org.molgenis.security.group.UpdateGroupMemberCommand
UpdateGroupMemberCommand - Class in org.molgenis.security.group
UpdateGroupMemberCommand() - Constructor for class org.molgenis.security.group.UpdateGroupMemberCommand
updateMember(String, String, UpdateGroupMemberCommand) - Method in class org.molgenis.security.group.GroupRestController
URI - Static variable in class org.molgenis.security.account.AccountController
URI - Static variable in class org.molgenis.security.login.MolgenisLoginController
URI - Static variable in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
UriConstants - Class in org.molgenis.security: URI constants used in security context
USER - Static variable in class org.molgenis.security.group.GroupRestController
USER_ID - Static variable in class org.molgenis.security.twofactor.model.RecoveryCodeMetadata
USER_ID - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
USER_SECRET - Static variable in class org.molgenis.security.twofactor.model.UserSecretMetaData
UserAccountService - Interface in org.molgenis.security.user: Manage account of the current user
UserAccountServiceImpl - Class in org.molgenis.security.user
UserAccountServiceImpl() - Constructor for class org.molgenis.security.user.UserAccountServiceImpl
userDetailsChecker() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
userDetailsService() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
UserDetailsService - Class in org.molgenis.security.user
UserDetailsService(DataService, GrantedAuthoritiesMapper) - Constructor for class org.molgenis.security.user.UserDetailsService
userDetailsServiceBean() - Method in class org.molgenis.security.MolgenisWebAppSecurityConfig
useRecoveryCode(String) - Method in interface org.molgenis.security.twofactor.service.RecoveryService: Checks if a recovery code is valid for the current user and throws an exception if it is not.
useRecoveryCode(String) - Method in class org.molgenis.security.twofactor.service.RecoveryServiceImpl
userIsBlocked() - Method in interface org.molgenis.security.twofactor.service.TwoFactorAuthenticationService
userIsBlocked() - Method in class org.molgenis.security.twofactor.service.TwoFactorAuthenticationServiceImpl
UsernameAlreadyExistsException - Exception in org.molgenis.security.account: Deprecated.
use class that extends from CodedRuntimeException
UsernameAlreadyExistsException() - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException: Deprecated.
UsernameAlreadyExistsException(String) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException: Deprecated.
UsernameAlreadyExistsException(Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException: Deprecated.
UsernameAlreadyExistsException(String, Throwable) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException: Deprecated.
UsernameAlreadyExistsException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.security.account.UsernameAlreadyExistsException: Deprecated.
UserPermissionEvaluatorImpl - Class in org.molgenis.security.permission
UserResponse - Class in org.molgenis.security.group
UserResponse() - Constructor for class org.molgenis.security.group.UserResponse
UserSecret - Class in org.molgenis.security.twofactor.model
UserSecret(Entity) - Constructor for class org.molgenis.security.twofactor.model.UserSecret
UserSecret(EntityType) - Constructor for class org.molgenis.security.twofactor.model.UserSecret
UserSecret(String, EntityType) - Constructor for class org.molgenis.security.twofactor.model.UserSecret
UserSecretFactory - Class in org.molgenis.security.twofactor.model
UserSecretMetaData - Class in org.molgenis.security.twofactor.model: User secret key for 2 factor authentication
UserSecretMetaData(SecurityPackage) - Constructor for class org.molgenis.security.twofactor.model.UserSecretMetaData

V

validate(Model, String) - Method in class org.molgenis.security.twofactor.TwoFactorAuthenticationController
validateCaptcha(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
validateCaptcha(String) - Method in class org.molgenis.security.captcha.CaptchaService: Validates a captcha answer.
validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.security.captcha.CaptchaController
validateCurrentUserPassword(String) - Method in interface org.molgenis.security.user.UserAccountService: Validates the password of the current logged in user
validateCurrentUserPassword(String) - Method in class org.molgenis.security.user.UserAccountServiceImpl
valueOf(String) - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.molgenis.security.twofactor.auth.TwoFactorAuthenticationSetting: Returns an array containing the constants of this enum type, in the order they are declared.

W

WebAppSecurityInitializer - Class in org.molgenis.security
WebAppSecurityInitializer() - Constructor for class org.molgenis.security.WebAppSecurityInitializer

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