org.molgenis.vcf

Class VcfSample

java.lang.Object

org.molgenis.vcf.VcfSample

public class VcfSample
extends Object

Constructor Summary

Constructors

Constructor and Description
VcfSample(VcfRecord vcfRecord)
VcfSample(VcfRecord vcfRecord, String[] tokens)

Method Summary

Modifier and Type	Method and Description
VcfSample	createClone()
List<Allele>	getAlleles()
String	getData(int idx)
List<Boolean>	getPhasings()
String[]	getTokens()
void	reset(String[] tokens)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfSample

public VcfSample(VcfRecord vcfRecord)

VcfSample

public VcfSample(VcfRecord vcfRecord,
                 String[] tokens)

Method Detail

getTokens

public String[] getTokens()

getData

public String getData(int idx)

Parameters:

idx -

Returns:

data for the sample record at the given position or null if data is set to the missing value

getPhasings

public List<Boolean> getPhasings()

getAlleles

public List<Allele> getAlleles()

createClone

public VcfSample createClone()

reset

public void reset(String[] tokens)