public class VcfMeta extends Object
| Modifier and Type | Field and Description |
|---|---|
static int |
COL_ALT_IDX |
static int |
COL_CHROM_IDX |
static int |
COL_FILTER_IDX |
static int |
COL_FORMAT_IDX |
static int |
COL_ID_IDX |
static int |
COL_INFO_IDX |
static int |
COL_POS_IDX |
static int |
COL_QUAL_IDX |
static int |
COL_REF_IDX |
| Constructor and Description |
|---|
VcfMeta() |
public static final int COL_CHROM_IDX
public static final int COL_POS_IDX
public static final int COL_ID_IDX
public static final int COL_REF_IDX
public static final int COL_ALT_IDX
public static final int COL_QUAL_IDX
public static final int COL_FILTER_IDX
public static final int COL_INFO_IDX
public static final int COL_FORMAT_IDX
public String getFileFormat()
public void setColNames(String[] colNames)
public String[] getColNames()
public String getSampleName(int nr)
public void addAltMeta(VcfMetaAlt vcfMetaAlt)
public Iterable<VcfMetaAlt> getAltMeta()
public VcfMetaAlt getAltMeta(String id)
public void addContigMeta(VcfMetaContig vcfMetaContig)
public Iterable<VcfMetaContig> getContigMeta()
public VcfMetaContig getContigMeta(String id)
public void addFilterMeta(VcfMetaFilter vcfMetaFilter)
public Iterable<VcfMetaFilter> getFilterMeta()
public VcfMetaFilter getFilterMeta(String id)
public void addFormatMeta(VcfMetaFormat vcfMetaFormat)
public Iterable<VcfMetaFormat> getFormatMeta()
public VcfMetaFormat getFormatMeta(String id)
public void addInfoMeta(VcfMetaInfo vcfMetaInfo)
public Iterable<VcfMetaInfo> getInfoMeta()
public VcfMetaInfo getInfoMeta(String id)
public void addPedigreeMeta(VcfMetaPedigree vcfMetaPedigree)
public Iterable<VcfMetaPedigree> getPedigreeMeta()
public void setVcfMetaSamples(Map<String,VcfMetaSample> vcfMetaSamples)
public void addSampleMeta(VcfMetaSample vcfMetaSample)
public Iterable<VcfMetaSample> getSampleMeta()
public VcfMetaSample getSampleMeta(String id)
Copyright © 2019. All rights reserved.