Package org.molgenis.vibe.core.formats

Class Disease

java.lang.Object

org.molgenis.vibe.core.formats.Entity

org.molgenis.vibe.core.formats.BiologicalEntity

org.molgenis.vibe.core.formats.Disease

All Implemented Interfaces:

Comparable<Entity>, AllFieldsEquals, ResourceUri

public class Disease
extends BiologicalEntity

A disease. Note that equality is determined through URIs from the domain http://linkedlifedata.com describing an identifier from the Unified Medical Language System (UMLS).

Field Summary

Fields

Modifier and Type	Field	Description
static String	ID_PREFIX

Constructor Summary

Constructors

Constructor	Description
Disease(String id)
Disease(String id, String name)
Disease(URI uri)
Disease(URI uri, String name)

Method Summary

Modifier and Type	Method	Description
protected String	getIdPrefix()	The entity prefix.
protected String	getIdRegex()	A regular expression an input String should adhere to when deriving the Entity from it.
protected int	getRegexIdGroup()	The group within the regular expression the actual Entity.id is stored in.
protected String	getUriPrefix()	The String describing the URI prefix it should match with.
String	toString()	While uniqueness is based on the Entity.id (as each Entity.id should only occur once and data belonging to it should be consistent), Entity.toString() can be used for testing whether data retrieval from external sources yielded the expected results.

Methods inherited from class org.molgenis.vibe.core.formats.Entity

allFieldsEquals, compareTo, equals, getFormattedId, getId, getName, getUri, hashCode, retrieveIdFromString, setName

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

ID_PREFIX

public static final String ID_PREFIX

See Also:

Constant Field Values

Constructor Detail

Disease

public Disease(String id)

Disease

public Disease(URI uri)

Disease

public Disease(String id,
               String name)
        throws InvalidStringFormatException

Throws:

InvalidStringFormatException

Disease

public Disease(URI uri,
               String name)
        throws InvalidStringFormatException

Throws:

InvalidStringFormatException

Method Detail

getIdPrefix

protected String getIdPrefix()

Description copied from class: Entity

The entity prefix.

Specified by:

getIdPrefix in class Entity

Returns:

a String containing the prefix.

getIdRegex

protected String getIdRegex()

Description copied from class: Entity

A regular expression an input String should adhere to when deriving the Entity from it.

Specified by:

getIdRegex in class Entity

Returns:

getRegexIdGroup

protected int getRegexIdGroup()

Description copied from class: Entity

The group within the regular expression the actual Entity.id is stored in.

Specified by:

getRegexIdGroup in class Entity

Returns:

getUriPrefix

protected String getUriPrefix()

Description copied from class: Entity

The String describing the URI prefix it should match with.

Specified by:

getUriPrefix in class Entity

Returns:

toString

public String toString()

Description copied from class: Entity

While uniqueness is based on the Entity.id (as each Entity.id should only occur once and data belonging to it should be consistent), Entity.toString() can be used for testing whether data retrieval from external sources yielded the expected results.

Overrides:

toString in class Entity