Package org.molgenis.vibe.core.formats

Enum GeneDiseaseCombinationType

java.lang.Object

java.lang.Enum<GeneDiseaseCombinationType>

org.molgenis.vibe.core.formats.GeneDiseaseCombinationType

All Implemented Interfaces:

Serializable, Comparable<GeneDiseaseCombinationType>, EnumTypeDefiner

public enum GeneDiseaseCombinationType
extends Enum<GeneDiseaseCombinationType>
implements EnumTypeDefiner

Based on: http://semanticscience.org/ontology/sio.owl (which is licensed under http://creativecommons.org/licenses/by/4.0/) Please refer to http://www.disgenet.org/ds/DisGeNET/html/images/ontology.svg for the Ontology overview.

Enum Constant Summary

Enum Constants

Enum Constant	Description
ALTERED_EXPRESSION
BIOMARKER
CASUAL_MUTATION
CHROMOSOMAL_REARRANGEMENT
FUSION_GENE
GENE_DISEASE
GENETIC_VARIATION
GENOMIC_ALTERATION
GERMLINE_CASUAL_MUTATION
GERMLINE_MODIFYING_MUTATION
MODIFYING_MUTATION
POST_TRANSLATIONAL_MODIFICATION
SOMATIC_CASUAL_MUTATION
SOMATIC_MODIFYING_MUTATION
SUSCEPTIBILITY_MUTATION
THERAPEUTIC

Field Summary

Fields

Modifier and Type	Field	Description
static GeneDiseaseCombinationType	ROOT	The root GeneDiseaseCombinationType of all association types available in this enum

Method Summary

Modifier and Type	Method	Description
String	getFormattedId()
String	getId()
static GeneDiseaseCombinationType	retrieve(String sio)
static GeneDiseaseCombinationType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static GeneDiseaseCombinationType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

GENE_DISEASE

public static final GeneDiseaseCombinationType GENE_DISEASE

THERAPEUTIC

public static final GeneDiseaseCombinationType THERAPEUTIC

BIOMARKER

public static final GeneDiseaseCombinationType BIOMARKER

GENOMIC_ALTERATION

public static final GeneDiseaseCombinationType GENOMIC_ALTERATION

ALTERED_EXPRESSION

public static final GeneDiseaseCombinationType ALTERED_EXPRESSION

POST_TRANSLATIONAL_MODIFICATION

public static final GeneDiseaseCombinationType POST_TRANSLATIONAL_MODIFICATION

CHROMOSOMAL_REARRANGEMENT

public static final GeneDiseaseCombinationType CHROMOSOMAL_REARRANGEMENT

GENETIC_VARIATION

public static final GeneDiseaseCombinationType GENETIC_VARIATION

FUSION_GENE

public static final GeneDiseaseCombinationType FUSION_GENE

SUSCEPTIBILITY_MUTATION

public static final GeneDiseaseCombinationType SUSCEPTIBILITY_MUTATION

CASUAL_MUTATION

public static final GeneDiseaseCombinationType CASUAL_MUTATION

MODIFYING_MUTATION

public static final GeneDiseaseCombinationType MODIFYING_MUTATION

SOMATIC_CASUAL_MUTATION

public static final GeneDiseaseCombinationType SOMATIC_CASUAL_MUTATION

GERMLINE_CASUAL_MUTATION

public static final GeneDiseaseCombinationType GERMLINE_CASUAL_MUTATION

SOMATIC_MODIFYING_MUTATION

public static final GeneDiseaseCombinationType SOMATIC_MODIFYING_MUTATION

GERMLINE_MODIFYING_MUTATION

public static final GeneDiseaseCombinationType GERMLINE_MODIFYING_MUTATION

Field Detail

ROOT

public static final GeneDiseaseCombinationType ROOT

The root GeneDiseaseCombinationType of all association types available in this enum

Method Detail

values

public static GeneDiseaseCombinationType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GeneDiseaseCombinationType c : GeneDiseaseCombinationType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GeneDiseaseCombinationType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getId

public String getId()

Specified by:

getId in interface EnumTypeDefiner

getFormattedId

public String getFormattedId()

retrieve

public static GeneDiseaseCombinationType retrieve(String sio)