Package org.molgenis.vibe.core.formats

Class PhenotypeNetworkCollection

java.lang.Object

org.molgenis.vibe.core.formats.PhenotypeNetworkCollection

public class PhenotypeNetworkCollection
extends Object

A collection of PhenotypeNetworks.

Constructor Summary

Constructors

Constructor	Description
PhenotypeNetworkCollection()

Method Summary

Modifier and Type	Method	Description
void	add(PhenotypeNetwork network)	Adds a PhenotypeNetwork to the PhenotypeNetworkCollection
void	clear()	Clears the PhenotypeNetworkCollection
boolean	equals(Object o)
PhenotypeNetwork	getPhenotypeNetworkBySource(Phenotype source)	Retrieve a PhenotypeNetwork based on its PhenotypeNetwork.getSource().
Set<Phenotype>	getPhenotypes()
int	hashCode()
PhenotypeNetwork	remove(Phenotype phenotypeSource)	Removes a PhenotypeNetwork from the PhenotypeNetworkCollection.
boolean	remove(PhenotypeNetwork network)	Removes a PhenotypeNetwork from the PhenotypeNetworkCollection.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PhenotypeNetworkCollection

public PhenotypeNetworkCollection()

Method Detail

getPhenotypes

public Set<Phenotype> getPhenotypes()

getPhenotypeNetworkBySource

public PhenotypeNetwork getPhenotypeNetworkBySource(Phenotype source)

Retrieve a PhenotypeNetwork based on its PhenotypeNetwork.getSource().

Parameters:

source - the source belonging to a PhenotypeNetwork

Returns:

the PhenotypeNetwork belonging to the source, or null if there is no PhenotypeNetwork available with that source

add

public void add(PhenotypeNetwork network)

Adds a PhenotypeNetwork to the PhenotypeNetworkCollection

Parameters:

network - the PhenotypeNetwork to be added

remove

public boolean remove(PhenotypeNetwork network)

Removes a PhenotypeNetwork from the PhenotypeNetworkCollection.

Parameters:

network - the PhenotypeNetwork to be removed

Returns:

true if it was removed, otherwise false

remove

public PhenotypeNetwork remove(Phenotype phenotypeSource)

Removes a PhenotypeNetwork from the PhenotypeNetworkCollection.

Parameters:

phenotypeSource - the PhenotypeNetwork.getSource() from the PhenotypeNetwork to be removed

Returns:

the PhenotypeNetwork if it was removed, otherwise null

clear

public void clear()

Clears the PhenotypeNetworkCollection

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object