Hierarchy For All Packages

Package Hierarchies:

• org.molgenis.vibe.core,
• org.molgenis.vibe.core.exceptions,
• org.molgenis.vibe.core.formats,
• org.molgenis.vibe.core.io.input,
• org.molgenis.vibe.core.ontology_processing,
• org.molgenis.vibe.core.query_output_digestion.prioritization,
• org.molgenis.vibe.core.query_output_digestion.prioritization.gene,
• org.molgenis.vibe.core.tdb_processing,
• org.molgenis.vibe.core.tdb_processing.query_string_creation

Class Hierarchy

• java.lang.Object
  • org.molgenis.vibe.core.formats.BiologicalEntityCollection<T1,T2,T3> (implements org.molgenis.vibe.core.formats.AllFieldsEquals, java.util.Collection<E>)
    • org.molgenis.vibe.core.formats.GeneDiseaseCollection
  • org.molgenis.vibe.core.formats.BiologicalEntityCombination<T1,T2> (implements org.molgenis.vibe.core.formats.AllFieldsEquals)
    • org.molgenis.vibe.core.formats.GeneDiseaseCombination
  • org.molgenis.vibe.core.tdb_processing.DisgenetRdfDataRetriever
    • org.molgenis.vibe.core.tdb_processing.GenesForPhenotypeRetriever
  • org.molgenis.vibe.core.formats.Entity (implements org.molgenis.vibe.core.formats.AllFieldsEquals, java.lang.Comparable<T>, org.molgenis.vibe.core.formats.ResourceUri)
    • org.molgenis.vibe.core.formats.BiologicalEntity
      • org.molgenis.vibe.core.formats.Disease
      • org.molgenis.vibe.core.formats.Gene (implements org.molgenis.vibe.core.formats.EntityWithIntId)
      • org.molgenis.vibe.core.formats.Phenotype
    • org.molgenis.vibe.core.formats.GeneSymbol
    • org.molgenis.vibe.core.formats.PubmedEvidence (implements org.molgenis.vibe.core.formats.EntityWithIntId)
  • org.molgenis.vibe.core.formats.GeneDiseaseCollectionJsonSerialization
    • org.molgenis.vibe.core.formats.GeneDiseaseCollectionDeserializer (implements com.google.gson.JsonDeserializer<T>)
    • org.molgenis.vibe.core.formats.GeneDiseaseCollectionSerializer (implements com.google.gson.JsonSerializer<T>)
  • org.molgenis.vibe.core.GeneDiseaseCollectionRetrievalRunner (implements java.util.concurrent.Callable<V>)
  • org.molgenis.vibe.core.query_output_digestion.prioritization.gene.HighestSingleDisgenetScoreGenePrioritizer (implements org.molgenis.vibe.core.query_output_digestion.prioritization.gene.GenePrioritizer)
  • org.molgenis.vibe.core.io.input.ModelFilesReader (implements org.molgenis.vibe.core.io.input.ModelReader)
    • org.molgenis.vibe.core.io.input.OntologyModelFilesReader
  • org.molgenis.vibe.core.formats.PhenotypeNetwork
  • org.molgenis.vibe.core.formats.PhenotypeNetworkCollection
  • org.molgenis.vibe.core.PhenotypesRetrievalRunner (implements java.util.concurrent.Callable<V>)
  • org.molgenis.vibe.core.ontology_processing.PhenotypesRetriever
    • org.molgenis.vibe.core.ontology_processing.ChildrenRetriever
    • org.molgenis.vibe.core.ontology_processing.MaxDistanceRetriever
  • org.molgenis.vibe.core.tdb_processing.QueryRunner (implements org.apache.jena.atlas.lib.Closeable, java.util.Iterator<E>)
  • org.molgenis.vibe.core.tdb_processing.query_string_creation.QueryString
  • org.molgenis.vibe.core.tdb_processing.query_string_creation.QueryStringGenerator
  • org.molgenis.vibe.core.tdb_processing.query_string_creation.QueryStringPathRange
  • org.molgenis.vibe.core.formats.Source (implements java.lang.Comparable<T>, org.molgenis.vibe.core.formats.ResourceUri)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • java.lang.IllegalArgumentException
          • org.molgenis.vibe.core.exceptions.InvalidStringFormatException
  • org.molgenis.vibe.core.io.input.TripleStoreDbReader (implements org.molgenis.vibe.core.io.input.ModelReader)

Interface Hierarchy

• org.molgenis.vibe.core.formats.AllFieldsEquals
• java.lang.AutoCloseable
  • java.io.Closeable
    • org.molgenis.vibe.core.io.input.ModelReader
• org.molgenis.vibe.core.formats.EntityWithIntId
• org.molgenis.vibe.core.formats.EnumTypeDefiner
• org.molgenis.vibe.core.query_output_digestion.prioritization.Prioritizer<T1,T2>
  • org.molgenis.vibe.core.query_output_digestion.prioritization.gene.GenePrioritizer
• org.molgenis.vibe.core.formats.ResourceUri

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.molgenis.vibe.core.formats.GeneDiseaseCombinationType (implements org.molgenis.vibe.core.formats.EnumTypeDefiner)
    • org.molgenis.vibe.core.ontology_processing.PhenotypesRetrieverFactory (implements org.molgenis.vibe.core.formats.EnumTypeDefiner)
    • org.molgenis.vibe.core.formats.Source.Level