Package org.molgenis.vibe.core.database_processing

Class DisgenetRdfDataRetriever

java.lang.Object

org.molgenis.vibe.core.database_processing.DisgenetRdfDataRetriever

Direct Known Subclasses:

GenesForPhenotypeRetriever

public abstract class DisgenetRdfDataRetriever
extends Object

Retrieves data for further usage from the DisGeNET database.

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	DisgenetRdfDataRetriever(ModelReader modelReader)

Method Summary

Modifier and Type	Method	Description
protected ModelReader	getModelReader()
protected Map<URI,Source>	getSources()	Requires retrieveSources() to be run first!
protected void	retrieveSources()	Retrieves sources from the database.
abstract void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DisgenetRdfDataRetriever

protected DisgenetRdfDataRetriever(ModelReader modelReader)

Method Detail

getModelReader

protected ModelReader getModelReader()

getSources

protected Map<URI,Source> getSources()

Requires retrieveSources() to be run first!

Returns:

all available Sources

run

public abstract void run()
                  throws IOException

Throws:

IOException

retrieveSources

protected void retrieveSources()

Retrieves sources from the database.