Uses of Class
org.molgenis.vibe.core.formats.Gene

Packages that use Gene

Package	Description
org.molgenis.vibe.core.formats
org.molgenis.vibe.core.query_output_digestion.prioritization.gene

Uses of Gene in org.molgenis.vibe.core.formats

Methods in org.molgenis.vibe.core.formats that return Gene

Modifier and Type	Method	Description
Gene	GeneDiseaseCombination.getGene()

Methods in org.molgenis.vibe.core.formats that return types with arguments of type Gene

Modifier and Type	Method	Description
Set<Gene>	GeneDiseaseCollection.getGenes()

Methods in org.molgenis.vibe.core.formats with parameters of type Gene

Modifier and Type	Method	Description
Set<GeneDiseaseCombination>	GeneDiseaseCollection.getByGene(Gene gene)	Get the GeneDiseaseCombinations for a single Gene.
List<GeneDiseaseCombination>	GeneDiseaseCollection.getByGeneOrderedByGdaScore(Gene gene)	Wrapper for GeneDiseaseCollection.getByGene(Gene) that returns an ordered List based on GeneDiseaseCombination.getDisgenetScore() (high->low) instead of a Set.

Constructors in org.molgenis.vibe.core.formats with parameters of type Gene

Constructor	Description
GeneDiseaseCombination(Gene gene, Disease disease)	Simple constructor allowing for easy comparison of collections.
GeneDiseaseCombination(Gene gene, Disease disease, double disgenetScore)

Uses of Gene in org.molgenis.vibe.core.query_output_digestion.prioritization.gene

Methods in org.molgenis.vibe.core.query_output_digestion.prioritization.gene that return types with arguments of type Gene

Modifier and Type	Method	Description
List<Gene>	GenePrioritizer.sort(GeneDiseaseCollection collection)
List<Gene>	HighestSingleDisgenetScoreGenePrioritizer.sort(GeneDiseaseCollection collection)