Package org.molgenis.vibe.core.formats

Interface Summary

Interface	Description
AllFieldsEquals	A deep equals that compares all fields of a Class, also ones that are not used by Object.equals(Object) (for example due to design-reasons, though validity for all fields still needs to be checked in unit-tests to assess everything functions as it should).
EntityWithIntId
EnumTypeDefiner
ResourceUri	An Object that also contains a reference to the unique ID within an RDF database (and this reference is an URI).

Class Summary

Class	Description
BiologicalEntity	Describes a biological entity (such as a Gene, Disease or Phenotype).
BiologicalEntityCollection<T1 extends BiologicalEntity,T2 extends BiologicalEntity,T3 extends BiologicalEntityCombination<T1,T2>>	A collection of 0 or more BiologicalEntityCombinations that have the same BiologicalEntityCollection and BiologicalEntityCollection class types.
BiologicalEntityCombination<T1 extends BiologicalEntity,T2 extends BiologicalEntity>	A combination of 2 BiologicalEntity subclass objects.
Disease	A disease.
Entity	Describes an entity.
Gene	A gene.
GeneDiseaseCollection	A collection of GeneDiseaseCombinations.
GeneDiseaseCollectionDeserializer
GeneDiseaseCollectionJsonSerialization
GeneDiseaseCollectionSerializer	Serializers a GeneDiseaseCollection to json.
GeneDiseaseCombination	A combination of a Gene and a Disease.
GeneSymbol
Phenotype	Defines a phenotype.
PhenotypeNetwork	A network of Phenotypes with a single source Phenotype from which the network is created.
PhenotypeNetworkCollection	A collection of PhenotypeNetworks.
PubmedEvidence
Source	Describes the source (the database) for a specific piece of information.

Enum Summary

Enum	Description
GeneDiseaseCombinationType	Based on: http://semanticscience.org/ontology/sio.owl (which is licensed under http://creativecommons.org/licenses/by/4.0/) Please refer to http://www.disgenet.org/ds/DisGeNET/html/images/ontology.svg for the Ontology overview.
Source.Level	The possible Source levels.