Module org.monarchinitiative.hpotextmining.core

Package org.monarchinitiative.hpotextmining.core.miners

Interface MinedTerm

public interface MinedTerm

Method Summary

Modifier and Type	Method	Description
int	getBegin()
int	getEnd()
String	getTermId()
boolean	isPresent()
static MinedTerm	of(int begin, int end, String termId, boolean isPresent)

Method Details

of

static MinedTerm of(int begin,
 int end,
 String termId,
 boolean isPresent)

getBegin

int getBegin()

Returns:

zero-based begin coordinate (not included) of text region, based on which this term was identified. The coordinate is with respect to the whole query text that has been mined for terms

getEnd

int getEnd()

Returns:

zero-based end coordinate (included) of text region, based on which this term was identified. The coordinate is with respect to the whole query text that has been mined for terms

getTermId

String getTermId()

Returns:

String with ontology term id identified in the text region (e.g. HP:123456, MP:654321)

isPresent

boolean isPresent()

Returns:

true, if the term is present in the patient's phenotype