Module org.monarchinitiative.hpotextmining.core

Package org.monarchinitiative.hpotextmining.core.miners.biolark

Class BiolarkToken

java.lang.Object

org.monarchinitiative.hpotextmining.core.miners.biolark.BiolarkToken

public final class BiolarkToken
extends Object

This class is an internal representation of a single HPO term within the HPO text-mining analysis. Text-mining server returns JSON response with a collection of these terms. Each PseudoTerm contains:

• HPO id
• preferred HPO label
• Set of synonyms for preferred label

Created by Daniel Danis on 6/19/17.

Constructor Summary

Constructors

Constructor	Description
BiolarkToken(String id, String label, Set<String> synonyms)	Create BiolarkToken with following content.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
String	getId()	Get HPO id for this term.
String	getLabel()	Get a label (term).
Set<String>	getSynonyms()	Get a copy of the synonyms.
int	hashCode()
void	setLabel(String label)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

BiolarkToken

public BiolarkToken(String id,
 String label,
 Set<String> synonyms)

Create BiolarkToken with following content.

Parameters:

id - HPO id (uri)

label - Preferred label for this label.

synonyms - Alternate labels for this label.

Method Details

getId

public String getId()

Get HPO id for this term.

Returns:

string with HPO id with prefix, e.g. HP:000082.

getLabel

public String getLabel()

Get a label (term).

Returns:

string with label

setLabel

public void setLabel(String label)

getSynonyms

public Set<String> getSynonyms()

Get a copy of the synonyms.

Returns:

set containing the synonyms.

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object