org.monarchinitiative.hpotextmining.gui.controller

Class OntologyTree

java.lang.Object

org.monarchinitiative.hpotextmining.gui.controller.OntologyTree

public class OntologyTree
extends Object

This class acts as the controller of the Pane on the left side of the main HPO dialog. The top part of the pane presents HPO hierarchy as a tree using TreeView. Details of any selected HPO term are presented at the bottom of the Pane.

User can either browse the ontology tree by expanding individual tree elements or jump to any term using a search text field with autocompletion capabilities.

The selected term (either present of not) is added to the table using Add button at the bottom of the Pane.

Since:

0.1

Version:

0.1.0

Author:

Daniel Danis, Aaron Zhang

Constructor Summary

Constructors

Constructor and Description
OntologyTree(org.monarchinitiative.phenol.ontology.data.Ontology ontology, java.util.function.Consumer<Main.PhenotypeTerm> addHook)

Method Summary

Modifier and Type	Method and Description
void	initialize() Populate the ontologyTreeView with the root Terms of provided Ontology.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyTree

public OntologyTree(org.monarchinitiative.phenol.ontology.data.Ontology ontology,
                    java.util.function.Consumer<Main.PhenotypeTerm> addHook)

Parameters:

ontology - Ontology to be displayed here as a tree

addHook - Consumer of Main.PhenotypeTerm, an approved term will be submitted here

Method Detail

initialize

public void initialize()

Populate the ontologyTreeView with the root Terms of provided Ontology. Initialize other JavaFX elements.