Module org.monarchinitiative.hpotextmining.gui

Package org.monarchinitiative.hpotextmining.gui.controller

Class Main

java.lang.Object

org.monarchinitiative.hpotextmining.gui.controller.Main

public class Main
extends Object

This class acts as the controller of the main dialog window of the HpoTextMining analysis dialog. The dialog window can be divided into these subparts:

• ontology tree pane - tree hierarchy of the ontology is presented here
• text-mining pane - place where user submits a query text that is mined for HPO terms. The results of the analysis are then presented in the same pane
• approved terms - table with the approved terms

The terms which are inside the approved terms table are available by from getPhenotypeTerms() method as Main.PhenotypeTerm instances.

Since:

0.1

Version:

0.1.0

Author:

Daniel Danis

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Main.PhenotypeTerm

Field Summary

Fields

Modifier and Type	Field	Description
javafx.scene.layout.StackPane	leftStackPane	Ontology is presented here by OntologyTree controller.

Constructor Summary

Constructors

Constructor	Description
Main()	Create the controller.

Method Summary

Modifier and Type	Method	Description
void	confirmAndClose()
void	initialize()	Initialize JavaFX components of Main controller.
void	removeTermButtonAction()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

leftStackPane

public javafx.scene.layout.StackPane leftStackPane

Ontology is presented here by OntologyTree controller.

Constructor Details

Main

public Main()

Create the controller.

Method Details

initialize

public void initialize()

Initialize JavaFX components of Main controller.

removeTermButtonAction

public void removeTermButtonAction()

confirmAndClose

public void confirmAndClose()