Module org.monarchinitiative.vmvt.cli

Package org.monarchinitiative.vmvt.cli.commands

Class EseCommand

java.lang.Object

org.monarchinitiative.vmvt.cli.commands.SequenceComparisonCommand

org.monarchinitiative.vmvt.cli.commands.EseCommand

All Implemented Interfaces:

Callable<Integer>

public class EseCommand
extends SequenceComparisonCommand
implements Callable<Integer>

Create an SVG representing the distribution of ESE scores

Field Summary

Fields

Modifier and Type	Field	Description
protected int	eseLength	Length, either 6 (hexamer) or 7 (heptameter)

Fields inherited from class org.monarchinitiative.vmvt.cli.commands.SequenceComparisonCommand

alternate, infile, outname, reference, seqlen

Constructor Summary

Constructors

Constructor	Description
EseCommand()

Method Summary

Modifier and Type	Method	Description
Integer	call()

Methods inherited from class org.monarchinitiative.vmvt.cli.commands.SequenceComparisonCommand

initSequences, readInputFile

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

eseLength

protected int eseLength

Length, either 6 (hexamer) or 7 (heptameter)

Constructor Details

EseCommand

public EseCommand()

Method Details

call

public Integer call()

Specified by:

call in interface Callable<Integer>