org.oncoblocks.centromere.core.dataimport.component

Class AbstractRecordFileReader<T extends Model<?>>

java.lang.Object

org.oncoblocks.centromere.core.dataimport.component.AbstractRecordFileReader<T>

All Implemented Interfaces:

RecordReader<T>

public abstract class AbstractRecordFileReader<T extends Model<?>>
extends Object
implements RecordReader<T>

Simple abstract implementation of RecordReader, for reading input files. Handles the file object opening and closing in the doBefore and doAfter methods, respectively.

Author:

woemler

Constructor Summary

Constructors

Constructor and Description
AbstractRecordFileReader()

Method Summary

Modifier and Type	Method and Description
void	close() Closes the target file, if a reader exists.
void	doAfter() Calls the close method on the reader.
void	doBefore(String input) Closes any open readers and opens the new target file.
protected BufferedReader	getReader()
void	open(String inputFilePath) Opens the target file and creates a BufferedReader, which can be referenced via its getter method.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.oncoblocks.centromere.core.dataimport.component.RecordReader

readRecord

Constructor Detail

AbstractRecordFileReader

public AbstractRecordFileReader()

Method Detail

doBefore

public void doBefore(String input)
              throws DataImportException

Closes any open readers and opens the new target file.

Specified by:

doBefore in interface RecordReader<T extends Model<?>>

Parameters:

input -

Throws:

DataImportException

doAfter

public void doAfter()

Calls the close method on the reader.

Specified by:

doAfter in interface RecordReader<T extends Model<?>>

open

public void open(String inputFilePath)
          throws DataImportException

Opens the target file and creates a BufferedReader, which can be referenced via its getter method.

Parameters:

inputFilePath -

Throws:

DataImportException

close

public void close()

Closes the target file, if a reader exists.

getReader

protected BufferedReader getReader()