org.oncoblocks.centromere.core.dataimport.component

Class GenericRecordProcessor<T extends Model<?>>

java.lang.Object

org.oncoblocks.centromere.core.dataimport.component.GenericRecordProcessor<T>

All Implemented Interfaces:

RecordProcessor, DataSetAware, ImportOptionsAware

public class GenericRecordProcessor<T extends Model<?>>
extends Object
implements RecordProcessor, ImportOptionsAware, DataSetAware

Basic RecordProcessor implementation, which can be used to handle most file import jobs. The doBefore and doAfter methods can be overridden to handle data set or data file metadata persistence, pre/post-processing, or other maintenance tasks. Uses a basic ImportOptions instance to set import parameters, and identify the directory to store all temporary files.

Author:

woemler

Constructor Summary

Constructors

Constructor and Description
GenericRecordProcessor()
GenericRecordProcessor(RecordReader<T> reader, org.springframework.validation.Validator validator, RecordWriter<T> writer, RecordImporter importer, ImportOptions options)

Method Summary

Modifier and Type	Method and Description
protected void	checkImportOptions()
void	doAfter() RecordProcessor.doAfter()
void	doBefore() RecordProcessor.doBefore()
Object	getDataSetId()
RecordImporter	getImporter()
ImportOptions	getImportOptions()
RecordReader<T>	getReader()
org.springframework.validation.Validator	getValidator()
RecordWriter<T>	getWriter()
void	run(String inputFilePath) RecordProcessor.run(String)
void	setDataSetId(Object dataSetId)
void	setImporter(RecordImporter importer)
void	setImportOptions(ImportOptions options)
void	setReader(RecordReader<T> reader)
void	setValidator(org.springframework.validation.Validator validator)
void	setWriter(RecordWriter<T> writer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenericRecordProcessor

public GenericRecordProcessor()

GenericRecordProcessor

public GenericRecordProcessor(RecordReader<T> reader,
                              org.springframework.validation.Validator validator,
                              RecordWriter<T> writer,
                              RecordImporter importer,
                              ImportOptions options)

Method Detail

doBefore

public void doBefore()

RecordProcessor.doBefore()

Specified by:

doBefore in interface RecordProcessor

doAfter

public void doAfter()

RecordProcessor.doAfter()

Specified by:

doAfter in interface RecordProcessor

run

public void run(String inputFilePath)
         throws DataImportException

RecordProcessor.run(String)

Specified by:

run in interface RecordProcessor

Parameters:

inputFilePath -

Throws:

DataImportException

checkImportOptions

protected void checkImportOptions()

getReader

public RecordReader<T> getReader()

setReader

public void setReader(RecordReader<T> reader)

getValidator

public org.springframework.validation.Validator getValidator()

setValidator

public void setValidator(org.springframework.validation.Validator validator)

getWriter

public RecordWriter<T> getWriter()

setWriter

public void setWriter(RecordWriter<T> writer)

getImporter

public RecordImporter getImporter()

setImporter

public void setImporter(RecordImporter importer)

getImportOptions

public ImportOptions getImportOptions()

setImportOptions

public void setImportOptions(ImportOptions options)

Specified by:

setImportOptions in interface ImportOptionsAware

getDataSetId

public Object getDataSetId()

setDataSetId

public void setDataSetId(Object dataSetId)

Specified by:

setDataSetId in interface DataSetAware