org.oncoblocks.centromere.core.dataimport

Interface ImportOptions

All Known Implementing Classes:

BasicImportOptions

public interface ImportOptions

Simple interface for allowing the passing of key-value string parameters between data import components.

Author:

woemler

Field Summary

Fields

Modifier and Type	Field and Description
static String	SKIP_EXISTING_FILES
static String	SKIP_INVALID_DATA_SETS
static String	SKIP_INVALID_GENES
static String	SKIP_INVALID_METADATA
static String	SKIP_INVALID_RECORDS
static String	SKIP_INVALID_SAMPLES
static String	TEMP_DIRECTORY_PATH

Method Summary

Modifier and Type	Method and Description
String	getOption(String name) Returns the string value of the given option, if it exists.
Map<String,String>	getOptions() Returns all of the key-value option pairs in the object.
boolean	hasOption(String name) Tests whether the option is present in the object's key-value map.

Field Detail

SKIP_INVALID_SAMPLES

static final String SKIP_INVALID_SAMPLES

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Constant Field Values

SKIP_INVALID_DATA_SETS

static final String SKIP_INVALID_DATA_SETS

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Constant Field Values

SKIP_INVALID_GENES

static final String SKIP_INVALID_GENES

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Constant Field Values

SKIP_INVALID_METADATA

static final String SKIP_INVALID_METADATA

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Constant Field Values

SKIP_INVALID_RECORDS

static final String SKIP_INVALID_RECORDS

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Constant Field Values

TEMP_DIRECTORY_PATH

static final String TEMP_DIRECTORY_PATH

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Constant Field Values

SKIP_EXISTING_FILES

static final String SKIP_EXISTING_FILES

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Constant Field Values

Method Detail

getOption

String getOption(String name)

Returns the string value of the given option, if it exists.

Parameters:

name - Key name of the option.

Returns:

String value of the option.

getOptions

Map<String,String> getOptions()

Returns all of the key-value option pairs in the object.

Returns:

Map of string options.

hasOption

boolean hasOption(String name)

Tests whether the option is present in the object's key-value map.

Parameters:

name - Key name of the option.

Returns:

true if the option exists, false otherwise.