Package org.oncoblocks.centromere.core.dataimport

Interface Summary

Interface	Description
DatabaseCredentials	Defines basic connection information necessary for accessing a database.
DataImportComponent	Ensures that data import component classes have flexible setup and teardown methods that run before and after the main import methods.
DataTypeSupport	Implementing classes are expected to support specific data types, which can be defined in the class declaration with a DataTypes annotation, or at runtime with the defined methods.
ImportOptions	Simple interface for allowing the passing of key-value string parameters between data import components.
ImportOptionsAware	Data import components that implement this interface are assumed to reference the BasicImportOptions for the containing data file or data set processing components.
RecordImporter	Data import component designed to take a temporary record file and import it directly into the database, via a specified utility (eg.
RecordProcessor<T extends Model<?>>	Record processors take all of the individual data import components (reader, writer, validator, and importer), and combines them to handle a single data type's import
RecordReader<T extends Model<?>>	Data impoer component class.
RecordWriter<T extends Model<?>>	Data import component class for writing imported Model records to a temporary file or RepositoryOperations implementation.

Class Summary

Class	Description
AbstractRecordFileReader<T extends Model<?>>	Simple abstract implementation of RecordReader, for reading input files.
AbstractRecordFileWriter<T extends Model<?>>	Basic abstract implementation of RecordWriter, for writing records to temp files.
BasicImportOptions	Captures basic parameters required for a data import pipeline.
GenericRecordProcessor<T extends Model<?>>	Basic RecordProcessor implementation, which can be used to handle most file import jobs.
RecordCollectionReader<T extends Model<?>>	Simple RecordReader implementation that iterates through a collection if Model records, rather than reading from a data source.
RepositoryRecordUpdater<T extends Model<ID>,ID extends Serializable>	Deprecated
RepositoryRecordWriter<T extends Model<?>>	Simple implementation of RecordWriter, that writes all records directly to the database using a RepositoryOperations implementation.

Enum Summary

Enum	Description
RepositoryRecordWriter.WriteMode

Exception Summary

Exception	Description
DataImportException	Generic exception thrown when a data import component has an unresolvable problem.

Annotation Types Summary

Annotation Type	Description
DataTypes	Identifies an annotated RecordProcessor as the primary handler of the specified data types.