Package org.openprovenance.prov.tutorial.tutorial6

Class ProvenanceChallenge1Template

java.lang.Object

org.openprovenance.prov.tutorial.tutorial6.ChallengeUtil

org.openprovenance.prov.tutorial.tutorial6.ChallengeCommon<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

org.openprovenance.prov.tutorial.tutorial6.ProvenanceChallenge1Template

All Implemented Interfaces:

Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>, ChallengeConstants, Variables

public class ProvenanceChallenge1Template
extends ChallengeCommon<Collection<org.openprovenance.prov.template.expander.BindingsBean>>
implements Variables

ProvToolbox Tutorial 5: provenance challenge workflow in Java and serializing it to SVG (in a file) and to PROVN (on the console).

Author:

lucmoreau

See Also:

provenance challenge

Field Summary

Fields inherited from class org.openprovenance.prov.tutorial.tutorial6.ChallengeUtil

name, pFactory

Fields inherited from interface org.openprovenance.prov.tutorial.tutorial6.ChallengeConstants

ALIGN_WARP, CONVERT, FILE, PC1_NS, PC1_PREFIX, PRIM_NS, PRIM_PREFIX, RESLICE, ROLE_H1, ROLE_H2, ROLE_H3, ROLE_H4, ROLE_HDR, ROLE_HDR_REF, ROLE_I1, ROLE_I2, ROLE_I3, ROLE_I4, ROLE_IMG, ROLE_IMG_REF, ROLE_IN, ROLE_OUT, ROLE_PARAM, SLICER, SOFTMEAN, STRING, VALUE

Fields inherited from interface org.openprovenance.prov.tutorial.tutorial6.Variables

VAR_AGENT, VAR_BLOCK_INSTANCE, VAR_BLOCK_TYPE, VAR_CONSUMED, VAR_CONSUMED_LABEL, VAR_CONSUMED_NAME, VAR_CONSUMED_TYPE, VAR_CONSUMED_VALUE, VAR_PARENT, VAR_PRODUCED, VAR_PRODUCED_LABEL, VAR_PRODUCED_NAME, VAR_PRODUCED_TYPE

Constructor Summary

Constructors

Constructor	Description
ProvenanceChallenge1Template(org.openprovenance.prov.model.ProvFactory pFactory)

Method Summary

Modifier and Type	Method	Description
List<org.openprovenance.prov.model.TypedValue>	a_val(String s)	Attribute value
List<org.openprovenance.prov.model.TypedValue>	a_val(org.openprovenance.prov.model.QualifiedName s)
Collection<org.openprovenance.prov.template.expander.BindingsBean>	align(String imgfile1, String imglabel, String hdrfile1, String hdrlabel, String imgreffile1, String imgreflabel, String hdrreffile1, String hdrreflabel, String activity, String warpfile, String warplabel, String workflow, String agent)	These attributes "partially" instantiate a template for align, with a set of constants
org.openprovenance.prov.model.QualifiedName	b_var(String name)	Binding variable
Collection<org.openprovenance.prov.template.expander.BindingsBean>	convert(String pgmfile, String activity, String giffile, String giflabel, String workflow, String agent)
org.openprovenance.prov.model.Document	expander(org.openprovenance.prov.model.Document docIn, org.openprovenance.prov.template.expander.Bindings bindings1)
static void	main(String[] args)
List<org.openprovenance.prov.template.expander.BindingsBean>	makeBindingsBean()
org.openprovenance.prov.model.Document	makeDocument(String bind)
Collection<org.openprovenance.prov.template.expander.BindingsBean>	reslice(String warp, String activity, String imgfile, String imglabel, String hdrfile, String hdrlabel, String workflow, String agent)
Collection<org.openprovenance.prov.template.expander.BindingsBean>	slice(String imgatlas, String hdratlas, String params, String paramslabel, String paramsvalue, String activity, String pgmfile, String pgmlabel, String workflow, String agent)
Collection<org.openprovenance.prov.template.expander.BindingsBean>	softmean(String imgfile1, String hdrfile1, String imgfile2, String hdrfile2, String imgfile3, String hdrfile3, String imgfile4, String hdrfile4, String activity, String imgatlas, String imglabel, String hdratlas, String hdrlabel, String workflow, String agent)

Methods inherited from class org.openprovenance.prov.tutorial.tutorial6.ChallengeCommon

overallWorkflow

Methods inherited from class org.openprovenance.prov.tutorial.tutorial6.ChallengeUtil

closingBanner, doConversions, newFile, newParameter, newUsed, newUsed, newWasDerivedFrom, newWasGeneratedBy, newWasGeneratedBy, openingBanner, pc, prim

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProvenanceChallenge1Template

public ProvenanceChallenge1Template(org.openprovenance.prov.model.ProvFactory pFactory)

Method Detail

b_var

public org.openprovenance.prov.model.QualifiedName b_var(String name)

Binding variable

a_val

public List<org.openprovenance.prov.model.TypedValue> a_val(String s)

Attribute value

a_val

public List<org.openprovenance.prov.model.TypedValue> a_val(org.openprovenance.prov.model.QualifiedName s)

align

public Collection<org.openprovenance.prov.template.expander.BindingsBean> align(String imgfile1,
                                                                                String imglabel,
                                                                                String hdrfile1,
                                                                                String hdrlabel,
                                                                                String imgreffile1,
                                                                                String imgreflabel,
                                                                                String hdrreffile1,
                                                                                String hdrreflabel,
                                                                                String activity,
                                                                                String warpfile,
                                                                                String warplabel,
                                                                                String workflow,
                                                                                String agent)

These attributes "partially" instantiate a template for align, with a set of constants

Specified by:

align in interface Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

reslice

public Collection<org.openprovenance.prov.template.expander.BindingsBean> reslice(String warp,
                                                                                  String activity,
                                                                                  String imgfile,
                                                                                  String imglabel,
                                                                                  String hdrfile,
                                                                                  String hdrlabel,
                                                                                  String workflow,
                                                                                  String agent)

Specified by:

reslice in interface Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

softmean

public Collection<org.openprovenance.prov.template.expander.BindingsBean> softmean(String imgfile1,
                                                                                   String hdrfile1,
                                                                                   String imgfile2,
                                                                                   String hdrfile2,
                                                                                   String imgfile3,
                                                                                   String hdrfile3,
                                                                                   String imgfile4,
                                                                                   String hdrfile4,
                                                                                   String activity,
                                                                                   String imgatlas,
                                                                                   String imglabel,
                                                                                   String hdratlas,
                                                                                   String hdrlabel,
                                                                                   String workflow,
                                                                                   String agent)

Specified by:

softmean in interface Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

slice

public Collection<org.openprovenance.prov.template.expander.BindingsBean> slice(String imgatlas,
                                                                                String hdratlas,
                                                                                String params,
                                                                                String paramslabel,
                                                                                String paramsvalue,
                                                                                String activity,
                                                                                String pgmfile,
                                                                                String pgmlabel,
                                                                                String workflow,
                                                                                String agent)

Specified by:

slice in interface Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

convert

public Collection<org.openprovenance.prov.template.expander.BindingsBean> convert(String pgmfile,
                                                                                  String activity,
                                                                                  String giffile,
                                                                                  String giflabel,
                                                                                  String workflow,
                                                                                  String agent)

Specified by:

convert in interface Challenge<Collection<org.openprovenance.prov.template.expander.BindingsBean>>

makeBindingsBean

public List<org.openprovenance.prov.template.expander.BindingsBean> makeBindingsBean()

expander

public org.openprovenance.prov.model.Document expander(org.openprovenance.prov.model.Document docIn,
                                                       org.openprovenance.prov.template.expander.Bindings bindings1)

makeDocument

public org.openprovenance.prov.model.Document makeDocument(String bind)

main

public static void main(String[] args)