Index (|---- PROV-VALIDATION 2.0.5 API)

A B C D E F G H I K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

actedOnBehalfOf - Variable in class org.openprovenance.prov.validation.report.TypeReport
actedOnBehalfOfTable - Variable in class org.openprovenance.prov.validation.Indexer
actedOnBehalfOfTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
activity - Variable in class org.openprovenance.prov.validation.report.TypeReport
activityEntries - Variable in class org.openprovenance.prov.validation.Inference
ActivityEntry - Class in org.openprovenance.prov.validation
ActivityEntry() - Constructor for class org.openprovenance.prov.validation.ActivityEntry
activityTable - Variable in class org.openprovenance.prov.validation.Indexer
activityTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
activityURI - Static variable in class org.openprovenance.prov.validation.Types
add(int, int, double) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
add(Duration) - Method in class org.openprovenance.prov.validation.VarTime
addAndPreserveStrictOrdering(int, int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
addAsValidatorType(String, Type) - Method in class org.openprovenance.prov.validation.Types
addAttributes(T, T) - Method in class org.openprovenance.prov.validation.Indexer
addDeclaredTypes() - Method in class org.openprovenance.prov.validation.Types
addDeclaredTypes(Class<Entry>, Hashtable<String, Entry>) - Method in class org.openprovenance.prov.validation.Types
addEndKey(String) - Method in class org.openprovenance.prov.validation.ActivityEntry
addEntry(Hashtable<QualifiedName, Set<QualifiedName>>, QualifiedName, QualifiedName) - Method in class org.openprovenance.prov.validation.Inference
addGenerationKey(String) - Method in class org.openprovenance.prov.validation.EntityEntry
addInferredType(String, String) - Method in class org.openprovenance.prov.validation.Types
addInferredType(QualifiedName, String) - Method in class org.openprovenance.prov.validation.Types
addInvalidationKey(String) - Method in class org.openprovenance.prov.validation.EntityEntry
addStartKey(String) - Method in class org.openprovenance.prov.validation.ActivityEntry
addToFailedMerge(Activity, Activity, String) - Method in class org.openprovenance.prov.validation.Indexer
addToFailedMerge(Activity, Statement, String) - Method in class org.openprovenance.prov.validation.Indexer
addToFailedMerge(MentionOf, MentionOf, String) - Method in class org.openprovenance.prov.validation.Indexer
addToFailedMerge(T, T, String) - Method in class org.openprovenance.prov.validation.Indexer
addTypeAttributes(Hashtable<String, Set<Type>>, T) - Method in class org.openprovenance.prov.validation.Indexer
addTypeAttributes(T) - Method in class org.openprovenance.prov.validation.Indexer
agent - Variable in class org.openprovenance.prov.validation.report.TypeReport
agentTable - Variable in class org.openprovenance.prov.validation.Indexer
agentTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
agentURI - Static variable in class org.openprovenance.prov.validation.Types
aggregatedTypes - Variable in class org.openprovenance.prov.validation.Types
alternateOf - Variable in class org.openprovenance.prov.validation.report.TypeReport
alternateOfList - Variable in class org.openprovenance.prov.validation.Indexer
applySubstitution(T, Hashtable<VarQNameWrapper, QualifiedName>, Hashtable<VarTime, XMLGregorianCalendar>) - Method in class org.openprovenance.prov.validation.Merger
applySubstitutionUnwrapped(T, Hashtable<VarQNameWrapper, QualifiedName>, Hashtable<VarTime, XMLGregorianCalendar>) - Method in class org.openprovenance.prov.validation.Merger
applyUnification() - Method in class org.openprovenance.prov.validation.Unification
applyUnification(Class<T>, Hashtable<String, T>) - Method in class org.openprovenance.prov.validation.Unification
associationURI - Static variable in class org.openprovenance.prov.validation.Types
attributionURI - Static variable in class org.openprovenance.prov.validation.Types

B

bundleURI - Static variable in class org.openprovenance.prov.validation.Types

C

checkActivityArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
checkActivityIsDeclared(QualifiedName) - Method in class org.openprovenance.prov.validation.Expansion: Checks an activity is declared.
checkAgentArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
checkAgentIsDeclared(QualifiedName) - Method in class org.openprovenance.prov.validation.Expansion: Checks an agent is declared.
checkEntityArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
checkEntityIsDeclared(QualifiedName) - Method in class org.openprovenance.prov.validation.Expansion: Checks an entity is declared.
checkSameQualifiedName(QualifiedName, QualifiedName, T, T) - Method in class org.openprovenance.prov.validation.Merger
cleanup(Config, List<Statement>, List<Bundle>) - Method in class org.openprovenance.prov.validation.Cleanup
Cleanup - Class in org.openprovenance.prov.validation: A class to clean up beans before serialization.
Cleanup(ProvUtilities) - Constructor for class org.openprovenance.prov.validation.Cleanup
clear() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
clear() - Method in class org.openprovenance.prov.validation.VarTime
clone() - Method in class org.openprovenance.prov.validation.VarTime
collectionURI - Static variable in class org.openprovenance.prov.validation.Types
colSet() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix: Returns a Set of all used "columns" in the matrix.
communicationURI - Static variable in class org.openprovenance.prov.validation.Types
compare(Integer, Integer) - Method in class org.openprovenance.prov.validation.EventMatrix.EventComparator
compare(XMLGregorianCalendar) - Method in class org.openprovenance.prov.validation.VarTime
completeDocument() - Method in class org.openprovenance.prov.validation.Validate
computeAlternateClosure(Config) - Method in class org.openprovenance.prov.validation.Inference
computeSpecializationClosure(Config) - Method in class org.openprovenance.prov.validation.Inference
computeTransitiveClosure(Hashtable<QualifiedName, Set<QualifiedName>>) - Method in class org.openprovenance.prov.validation.Inference
config - Variable in class org.openprovenance.prov.validation.Config
Config - Class in org.openprovenance.prov.validation
Config(Map<String, Object>, ProvFactory, ObjectMaker) - Constructor for class org.openprovenance.prov.validation.Config
conflictingTypes(Collection<String>) - Method in class org.openprovenance.prov.validation.Types
constraint_actedOnBehalfOf_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_ACTEDONBEHALFOF_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_DERIVATION_GENERATION_GENERATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_derivation_generation_precedes_generation() - Method in class org.openprovenance.prov.validation.Constraints
constraint_derivation_usage_generation_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_DERIVATION_USAGE_GENERATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_end_end_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_END_END_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_entity_activity_disjoint() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_ENTITY_ACTIVITY_DISJOINT - Static variable in class org.openprovenance.prov.validation.Config
constraint_generation_generation_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_GENERATION_GENERATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_generation_precedes_end() - Method in class org.openprovenance.prov.validation.Constraints
constraint_generation_precedes_invalidation() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_GENERATION_PRECEDES_INVALIDATION - Static variable in class org.openprovenance.prov.validation.Config
constraint_generation_precedes_usage() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_GENERATION_PRECEDES_USAGE - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_GENERATION_WITHIN_ACTIVITY - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_IMPOSSIBLE_INFLUENCE_REFLEXIVE - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_IMPOSSIBLE_OBJECT_PROPERTY_OVERLAP - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_IMPOSSIBLE_PROPERTY_OVERLAP - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_IMPOSSIBLE_SPECIALIZATION_REFLEXIVE - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_IMPOSSIBLE_UNSPECIFIED_DERIVATION_GENERATION_USE - Static variable in class org.openprovenance.prov.validation.Config
constraint_invalidation_invalidation_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_INVALIDATION_INVALIDATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_KEY_OBJECT - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_KEY_PROPERTIES - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_MEMBERSHIP_EMPTY_COLLECTION - Static variable in class org.openprovenance.prov.validation.Config
constraint_specialization_generation_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_SPECIALIZATION_GENERATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_specialization_invalidation_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_SPECIALIZATION_INVALIDATION_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_start_precedes_end() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_START_PRECEDES_END - Static variable in class org.openprovenance.prov.validation.Config
constraint_start_precedes_generation() - Method in class org.openprovenance.prov.validation.Constraints
constraint_start_precedes_usage() - Method in class org.openprovenance.prov.validation.Constraints
constraint_start_start_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_START_START_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_TYPING - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_ENDTIME - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_GENERATION - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_INVALIDATION - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_MENTION - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_STARTTIME - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_WASENDEDBY - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_UNIQUE_WASSTARTEDBY - Static variable in class org.openprovenance.prov.validation.Config
constraint_usage_precedes_end() - Method in class org.openprovenance.prov.validation.Constraints
constraint_usage_precedes_invalidation() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_USAGE_PRECEDES_INVALIDATION - Static variable in class org.openprovenance.prov.validation.Config
CONSTRAINT_USAGE_WITHIN_ACTIVITY - Static variable in class org.openprovenance.prov.validation.Config
constraint_wasAssociatedWith_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_WASASSOCIATEDWITH_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_wasAttributedTo_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_WASATTRIBUTEDTO_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_wasEndedBy_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_WASENDEDBY_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_wasInformedBy_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_WASINFORMEDBY_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraint_wasStartedBy_ordering() - Method in class org.openprovenance.prov.validation.Constraints
CONSTRAINT_WASSTARTEDBY_ORDERING - Static variable in class org.openprovenance.prov.validation.Config
constraints - Variable in class org.openprovenance.prov.validation.Validate
constraints(Config) - Method in class org.openprovenance.prov.validation.Constraints
constraints(Config, boolean) - Method in class org.openprovenance.prov.validation.Constraints
Constraints - Class in org.openprovenance.prov.validation: A class to compute ordering constraints.
Constraints(Types, Indexer, Inference, EventIndexer) - Constructor for class org.openprovenance.prov.validation.Constraints
convertToValidatorURI(String) - Method in class org.openprovenance.prov.validation.Types
createEventIndex() - Method in class org.openprovenance.prov.validation.EventIndexer: Create a rough order: start, generation, usage, end, invalidation.
CustomXMLGregorianCalendarDeserializer - Class in org.openprovenance.prov.validation.report.json
CustomXMLGregorianCalendarDeserializer() - Constructor for class org.openprovenance.prov.validation.report.json.CustomXMLGregorianCalendarDeserializer
CustomXMLGregorianCalendarDeserializer(Class<?>) - Constructor for class org.openprovenance.prov.validation.report.json.CustomXMLGregorianCalendarDeserializer
cycle - Variable in class org.openprovenance.prov.validation.report.ValidationReport

D

DEFINITION_OPTIONAL_ATTRIBUTES - Static variable in class org.openprovenance.prov.validation.Config
DEFINITION_OPTIONAL_IDENTIFIERS - Static variable in class org.openprovenance.prov.validation.Config
DEFINITION_OPTIONAL_PLACEHOLDERS - Static variable in class org.openprovenance.prov.validation.Config
DEFINITION_SHORT_FORMS - Static variable in class org.openprovenance.prov.validation.Config
delegationURI - Static variable in class org.openprovenance.prov.validation.Types
DenseMatrix - Class in org.openprovenance.prov.validation.matrix
DenseMatrix(int, int) - Constructor for class org.openprovenance.prov.validation.matrix.DenseMatrix
Dependencies - Class in org.openprovenance.prov.validation.report
Dependencies() - Constructor for class org.openprovenance.prov.validation.report.Dependencies
DependenciesInterface - Interface in org.openprovenance.prov.validation.report.json
deposited - Variable in class org.openprovenance.prov.validation.report.ValidationReport
derivationURI - Static variable in class org.openprovenance.prov.validation.Types
derivedByInsertionFrom - Variable in class org.openprovenance.prov.validation.report.TypeReport
derivedByRemovalFrom - Variable in class org.openprovenance.prov.validation.report.TypeReport
deserialize(JsonParser, DeserializationContext) - Method in class org.openprovenance.prov.validation.report.json.CustomXMLGregorianCalendarDeserializer
diagonal() - Method in class org.openprovenance.prov.validation.EventMatrix
displayMatrix2() - Method in class org.openprovenance.prov.validation.EventMatrix
displayMatrix3() - Method in class org.openprovenance.prov.validation.EventMatrix
doAction(ActedOnBehalfOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(Activity) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(Agent) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(AlternateOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(Bundle, ProvUtilities) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(DerivedByInsertionFrom) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(DerivedByRemovalFrom) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(DictionaryMembership) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(Entity) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(QualifiedAlternateOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(QualifiedHadMember) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(QualifiedSpecializationOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(HadMember) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(MentionOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(SpecializationOf) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(Used) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasAssociatedWith) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasAttributedTo) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasDerivedFrom) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasEndedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasGeneratedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasInfluencedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasInformedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasInvalidatedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
doAction(WasStartedBy) - Method in class org.openprovenance.prov.validation.Indexer.TypeTable
document - Variable in class org.openprovenance.prov.validation.report.ValidationReport

E

emptyCollectionURI - Static variable in class org.openprovenance.prov.validation.Types
endURI - Static variable in class org.openprovenance.prov.validation.Types
entity - Variable in class org.openprovenance.prov.validation.report.TypeReport
entityAndActivityAndWasGeneratedBy - Variable in class org.openprovenance.prov.validation.report.MalformedStatements
entityAndActivityAndWasGeneratedBy - Variable in class org.openprovenance.prov.validation.report.SomeStatements
entityEntries - Variable in class org.openprovenance.prov.validation.Inference
EntityEntry - Class in org.openprovenance.prov.validation
EntityEntry() - Constructor for class org.openprovenance.prov.validation.EntityEntry
entityTable - Variable in class org.openprovenance.prov.validation.Indexer
entityTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
entityURI - Static variable in class org.openprovenance.prov.validation.Types
epsilon - Static variable in class org.openprovenance.prov.validation.EventMatrix
epsilon - Static variable in class org.openprovenance.prov.validation.matrix.DenseMatrix
equals(Object) - Method in class org.openprovenance.prov.validation.matrix.Pair
equals(Object) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
equals(Object) - Method in class org.openprovenance.prov.validation.report.Dependencies
equals(Object) - Method in class org.openprovenance.prov.validation.report.MalformedStatements
equals(Object) - Method in class org.openprovenance.prov.validation.report.MergeReport
equals(Object) - Method in class org.openprovenance.prov.validation.report.SomeStatements
equals(Object) - Method in class org.openprovenance.prov.validation.report.SpecializationReport
equals(Object) - Method in class org.openprovenance.prov.validation.report.TypeOverlap
equals(Object) - Method in class org.openprovenance.prov.validation.report.TypeReport
equals(Object) - Method in class org.openprovenance.prov.validation.report.ValidationReport
equals(Object) - Method in class org.openprovenance.prov.validation.TwoKeys
equals(Object) - Method in class org.openprovenance.prov.validation.VarQNameWrapper
equals(Object) - Method in class org.openprovenance.prov.validation.VarTime
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.Dependencies
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.MalformedStatements
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.MergeReport
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.SomeStatements
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.SpecializationReport
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.TypeOverlap
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.TypeReport
equals(Object, EqualsBuilder) - Method in class org.openprovenance.prov.validation.report.ValidationReport
EventComparator() - Constructor for class org.openprovenance.prov.validation.EventMatrix.EventComparator
eventIndex - Variable in class org.openprovenance.prov.validation.EventIndexer
EventIndexer - Class in org.openprovenance.prov.validation: A class to complete a graph, adding a generation/invalidation for each entity, start/end for each activity.
EventIndexer(Indexer) - Constructor for class org.openprovenance.prov.validation.EventIndexer
EventMatrix - Class in org.openprovenance.prov.validation
EventMatrix(int, Vector<String>) - Constructor for class org.openprovenance.prov.validation.EventMatrix
EventMatrix.EventComparator - Class in org.openprovenance.prov.validation
eventTable - Variable in class org.openprovenance.prov.validation.EventIndexer
evtIdx - Variable in class org.openprovenance.prov.validation.Validate
existentialVariable(String) - Method in class org.openprovenance.prov.validation.Indexer
existentialVariable(QualifiedName) - Method in class org.openprovenance.prov.validation.Indexer
ExistentialVariable - Interface in org.openprovenance.prov.validation
expand_activityArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expand_agentArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expand_entityArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expand_generationArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expand_timeArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expand_usageArgument(Config, Statement, int) - Method in class org.openprovenance.prov.validation.Expansion
expansion(Config, List<Statement>) - Method in class org.openprovenance.prov.validation.Expansion
Expansion - Class in org.openprovenance.prov.validation: This class checks that 1.
Expansion(Indexer, Config, Types) - Constructor for class org.openprovenance.prov.validation.Expansion
expansion_actedOnBehalfOf(Config, ActedOnBehalfOf) - Method in class org.openprovenance.prov.validation.Expansion
expansion_activity(Config, Activity) - Method in class org.openprovenance.prov.validation.Expansion
expansion_agent(Config, Agent) - Method in class org.openprovenance.prov.validation.Expansion
expansion_alternateOf(Config, AlternateOf) - Method in class org.openprovenance.prov.validation.Expansion
expansion_entity(Config, Entity) - Method in class org.openprovenance.prov.validation.Expansion
expansion_membership(Config, HadMember) - Method in class org.openprovenance.prov.validation.Expansion
expansion_mentionOf(Config, MentionOf) - Method in class org.openprovenance.prov.validation.Expansion
expansion_specializationOf(Config, SpecializationOf) - Method in class org.openprovenance.prov.validation.Expansion
expansion_used(Config, Used) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasAssociatedWith(Config, WasAssociatedWith) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasAttributedTo(Config, WasAttributedTo) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasDerivedFrom(Config, WasDerivedFrom) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasEndedBy(Config, WasEndedBy) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasGeneratedBy(Config, WasGeneratedBy) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasInfluencedBy(Config, WasInfluencedBy) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasInformedBy(Config, WasInformedBy) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasInvalidatedBy(Config, WasInvalidatedBy) - Method in class org.openprovenance.prov.validation.Expansion
expansion_wasStartedBy(Config, WasStartedBy) - Method in class org.openprovenance.prov.validation.Expansion

F

failedMerge - Variable in class org.openprovenance.prov.validation.Indexer
failedMerge - Variable in class org.openprovenance.prov.validation.report.ValidationReport
floydWarshall() - Method in class org.openprovenance.prov.validation.EventMatrix
floydWarshall(Matrix) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
floydWarshall(Matrix) - Method in interface org.openprovenance.prov.validation.matrix.Matrix
floydWarshall(SparseMatrix) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
floydWarshallWithIterator(SparseMatrix) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix

G

g - Variable in class org.openprovenance.prov.validation.Indexer
g(int, int) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
g(int, int) - Method in interface org.openprovenance.prov.validation.matrix.Matrix
g(int, int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix: Returns the value found at the specified row and column of the matrix.
generateImage(ImageWriter, ImageOutputStream) - Method in class org.openprovenance.prov.validation.EventMatrix
generateImage1(OutputStream) - Method in class org.openprovenance.prov.validation.EventMatrix
generateImage1(String) - Method in class org.openprovenance.prov.validation.EventMatrix
generationURI - Static variable in class org.openprovenance.prov.validation.Types
Gensym - Class in org.openprovenance.prov.validation
Gensym(Namespace, ProvFactory, ObjectMaker) - Constructor for class org.openprovenance.prov.validation.Gensym
get(int, int) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
getActedOnBehalfOf() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the actedOnBehalfOf property.
getActivity() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the activity property.
getAgent() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the agent property.
getAlternateOf() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the alternateOf property.
getCol(int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
getConstraints() - Method in class org.openprovenance.prov.validation.Validate
getCycle() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getCycle() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the cycle property.
getCyclicEvents(List<Integer>) - Method in class org.openprovenance.prov.validation.Validate
getData() - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
getDay() - Method in class org.openprovenance.prov.validation.VarTime
getDerivedByInsertionFrom() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the derivedByInsertionFrom property.
getDerivedByRemovalFrom() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the derivedByRemovalFrom property.
getDocument() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the document property.
getEndKey() - Method in class org.openprovenance.prov.validation.ActivityEntry
getEntity() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the entity property.
getEon() - Method in class org.openprovenance.prov.validation.VarTime
getEonAndYear() - Method in class org.openprovenance.prov.validation.VarTime
getEventIndexer() - Method in class org.openprovenance.prov.validation.Validate
getFailedMerge() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getFailedMerge() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the failedMerge property.
getFirst() - Method in class org.openprovenance.prov.validation.matrix.Pair: Returns the first.
getFirstTimeIndex(Statement) - Static method in class org.openprovenance.prov.validation.Merger
getFractionalSecond() - Method in class org.openprovenance.prov.validation.VarTime
getGenerationKey() - Method in class org.openprovenance.prov.validation.EntityEntry
getHadDictionaryMember() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the hadDictionaryMember property.
getHadMember() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the hadMember property.
getHour() - Method in class org.openprovenance.prov.validation.VarTime
getId() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getId() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the id property.
getIndexer() - Method in class org.openprovenance.prov.validation.Validate
getInference() - Method in class org.openprovenance.prov.validation.Validate
getInvalidationKey() - Method in class org.openprovenance.prov.validation.EntityEntry
getKey() - Method in interface org.openprovenance.prov.validation.report.json.MergeReportInterface
getKey() - Method in class org.openprovenance.prov.validation.report.MergeReport: Gets the value of the key property.
getKey() - Method in class org.openprovenance.prov.validation.report.TypeOverlap: Gets the value of the key property.
getKey() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the key property.
getLastIndex(Statement) - Static method in class org.openprovenance.prov.validation.Merger
getMalformed() - Method in class org.openprovenance.prov.validation.Expansion
getMalformedStatements() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the malformedStatements property.
getMatrix() - Method in class org.openprovenance.prov.validation.Constraints
getMaximum() - Method in class org.openprovenance.prov.validation.EventMatrix
getMaximum() - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
getMaximum() - Method in interface org.openprovenance.prov.validation.matrix.Matrix
getMaximum() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
getMentionOf() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the mentionOf property.
getMinute() - Method in class org.openprovenance.prov.validation.VarTime
getMonth() - Method in class org.openprovenance.prov.validation.VarTime
getNamespace() - Method in class org.openprovenance.prov.validation.report.ValidationReport
getNonStrictCycle() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getNonStrictCycle() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the nonStrictCycle property.
getOrCreateActivityEntry(String) - Method in class org.openprovenance.prov.validation.Inference
getOrCreateEntityEntry(String) - Method in class org.openprovenance.prov.validation.Inference
getPath(int, int) - Method in class org.openprovenance.prov.validation.EventMatrix
getPath2_old(int, int) - Method in class org.openprovenance.prov.validation.EventMatrix
getQualifiedNameMismatch() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getQualifiedNameMismatch() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the qualifiedNameMismatch property.
getReport() - Method in class org.openprovenance.prov.validation.Validate
getRow(int) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
getRow(int) - Method in interface org.openprovenance.prov.validation.matrix.Matrix
getRow(int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
getSecond() - Method in class org.openprovenance.prov.validation.matrix.Pair: Returns the second.
getSecond() - Method in class org.openprovenance.prov.validation.VarTime
getSpecializationOf() - Method in interface org.openprovenance.prov.validation.report.json.SpecializationReportInterface
getSpecializationOf() - Method in class org.openprovenance.prov.validation.report.SpecializationReport: Gets the value of the specializationOf property.
getSpecializationOf() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the specializationOf property.
getSpecializationReport() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getSpecializationReport() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the specializationReport property.
getStartKey() - Method in class org.openprovenance.prov.validation.ActivityEntry
getStatement() - Method in class org.openprovenance.prov.validation.report.Dependencies: Gets the value of the usedOrWasGeneratedByOrWasStartedBy property.
getStatement() - Method in interface org.openprovenance.prov.validation.report.json.DependenciesInterface
getStatement() - Method in interface org.openprovenance.prov.validation.report.json.MergeReportInterface
getStatement() - Method in class org.openprovenance.prov.validation.report.MalformedStatements: Gets the value of the entityAndActivityAndWasGeneratedBy property.
getStatement() - Method in class org.openprovenance.prov.validation.report.SomeStatements: Gets the value of the entityAndActivityAndWasGeneratedBy property.
getSuccessfulMerge() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getSuccessfulMerge() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the successfulMerge property.
getTimezone() - Method in class org.openprovenance.prov.validation.VarTime
getTimeZone(int) - Method in class org.openprovenance.prov.validation.VarTime
getType() - Method in class org.openprovenance.prov.validation.report.TypeOverlap: Gets the value of the type property.
getTypeOverlap() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the typeOverlap property.
getTypeReport() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
getTypeReport() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the typeReport property.
getTypes(Integer[]) - Method in class org.openprovenance.prov.validation.Types
getTypeTable(T) - Method in class org.openprovenance.prov.validation.Indexer
getUri() - Method in interface org.openprovenance.prov.validation.ExistentialVariable
getUri() - Method in class org.openprovenance.prov.validation.VarTime
getUsed() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the used property.
getValidationReport() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the validationReport property.
getValidationReportMapper() - Static method in class org.openprovenance.prov.validation.report.json.Mapper
getValue() - Method in class org.openprovenance.prov.validation.matrix.Pair
getVarQName() - Method in class org.openprovenance.prov.validation.VarQNameWrapper
getWasAssociatedWith() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasAssociatedWith property.
getWasAttributedTo() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasAttributedTo property.
getWasDerivedFrom() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasDerivedFrom property.
getWasEndedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasEndedBy property.
getWasGeneratedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasGeneratedBy property.
getWasInfluencedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasInfluencedBy property.
getWasInformedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasInformedBy property.
getWasInvalidatedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasInvalidatedBy property.
getWasStartedBy() - Method in class org.openprovenance.prov.validation.report.TypeReport: Gets the value of the wasStartedBy property.
getXMLSchemaType() - Method in class org.openprovenance.prov.validation.VarTime
getYear() - Method in class org.openprovenance.prov.validation.VarTime

H

hadDictionaryMember - Variable in class org.openprovenance.prov.validation.report.TypeReport
hadMember - Variable in class org.openprovenance.prov.validation.report.TypeReport
hashCode() - Method in class org.openprovenance.prov.validation.matrix.Pair
hashCode() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
hashCode() - Method in class org.openprovenance.prov.validation.report.Dependencies
hashCode() - Method in class org.openprovenance.prov.validation.report.MalformedStatements
hashCode() - Method in class org.openprovenance.prov.validation.report.MergeReport
hashCode() - Method in class org.openprovenance.prov.validation.report.SomeStatements
hashCode() - Method in class org.openprovenance.prov.validation.report.SpecializationReport
hashCode() - Method in class org.openprovenance.prov.validation.report.TypeOverlap
hashCode() - Method in class org.openprovenance.prov.validation.report.TypeReport
hashCode() - Method in class org.openprovenance.prov.validation.report.ValidationReport
hashCode() - Method in class org.openprovenance.prov.validation.TwoKeys
hashCode() - Method in class org.openprovenance.prov.validation.VarQNameWrapper
hashCode() - Method in class org.openprovenance.prov.validation.VarTime
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.Dependencies
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.MalformedStatements
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.MergeReport
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.SomeStatements
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.SpecializationReport
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.TypeOverlap
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.TypeReport
hashCode(HashCodeBuilder) - Method in class org.openprovenance.prov.validation.report.ValidationReport

I

id - Variable in class org.openprovenance.prov.validation.report.ValidationReport
illegalOverlaps - Variable in class org.openprovenance.prov.validation.Types
implementedTable - Static variable in class org.openprovenance.prov.validation.Config
ind - Variable in class org.openprovenance.prov.validation.Validate
index(List<Statement>) - Method in class org.openprovenance.prov.validation.Indexer
index(Bundle) - Method in class org.openprovenance.prov.validation.Indexer
index(Document) - Method in class org.openprovenance.prov.validation.Indexer
indexer - Variable in class org.openprovenance.prov.validation.Uniqueness
Indexer - Class in org.openprovenance.prov.validation
Indexer(ProvFactory, ObjectMaker) - Constructor for class org.openprovenance.prov.validation.Indexer
Indexer.TypeTable - Class in org.openprovenance.prov.validation
Inference - Class in org.openprovenance.prov.validation
Inference(Indexer, Types) - Constructor for class org.openprovenance.prov.validation.Inference
INFERENCE_ACTIVITY_START_END_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_ALTERNATE_REFLEXIVE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_ALTERNATE_SYMMETRIC - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_ALTERNATE_TRANSITIVE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_ATTRIBUTION_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_COMMUNICATION_GENERATION_USE_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_DELEGATION_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_DERIVATION_GENERATION_USE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_DERIVATION_USE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_ENTITY_GENERATION_INVALIDATION_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_GENERATION_USE_COMMUNICATION_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_INFLUENCE_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_MENTION_SPECIALIZATION - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_QUOTATION_IMPLICATION - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_REVISION_IS_ALTERNATE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_SPECIALIZATION_ALTERNATE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_SPECIALIZATION_ATTRIBUTES_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_SPECIALIZATION_TRANSITIVE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_SPECIFIC_DERIVATION_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_WASENDEDBY_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
INFERENCE_WASSTARTEDBY_INFERENCE - Static variable in class org.openprovenance.prov.validation.Config
inferIntervalBeginningAndEnds(Config) - Method in class org.openprovenance.prov.validation.Inference
influenceURI - Static variable in class org.openprovenance.prov.validation.Types
initializeTypes(Hashtable<Integer, String>) - Method in class org.openprovenance.prov.validation.Types
invalidationURI - Static variable in class org.openprovenance.prov.validation.Types
isDeposited() - Method in interface org.openprovenance.prov.validation.report.json.ValidationReportInterface
isDeposited() - Method in class org.openprovenance.prov.validation.report.ValidationReport: Gets the value of the deposited property.
isNonStrictOrdering(int) - Static method in class org.openprovenance.prov.validation.matrix.SparseMatrix
isTrue(String) - Method in class org.openprovenance.prov.validation.Config
isValid() - Method in class org.openprovenance.prov.validation.VarTime

K

key - Variable in class org.openprovenance.prov.validation.report.MergeReport
key - Variable in class org.openprovenance.prov.validation.report.TypeOverlap
key - Variable in class org.openprovenance.prov.validation.report.TypeReport

L

longValidatorVersion - Static variable in class org.openprovenance.prov.validation.Validate
longVersion - Static variable in class org.openprovenance.prov.validation.Validate

M

m - Variable in class org.openprovenance.prov.validation.EventMatrix
makeTableIndex() - Method in class org.openprovenance.prov.validation.Indexer: TODO: can it be: Hashtable<Class,Hashtable<String,T>> TODO use this index to make other functions polymorphic.
makeTwoKeys(Object) - Static method in class org.openprovenance.prov.validation.TwoKeys
makeUnknown(String, String) - Method in interface org.openprovenance.prov.validation.ObjectMaker
makeVarQName(String, String, String) - Method in interface org.openprovenance.prov.validation.ObjectMaker
makeVarQName(QualifiedName) - Method in interface org.openprovenance.prov.validation.ObjectMaker
malformedExpression(T) - Method in class org.openprovenance.prov.validation.Expansion
malformedExpression(T, boolean) - Method in class org.openprovenance.prov.validation.Expansion
malformedStatements - Variable in class org.openprovenance.prov.validation.report.ValidationReport
MalformedStatements - Class in org.openprovenance.prov.validation.report: Java class for MalformedStatements complex type.
MalformedStatements() - Constructor for class org.openprovenance.prov.validation.report.MalformedStatements
Mapper - Class in org.openprovenance.prov.validation.report.json
Mapper() - Constructor for class org.openprovenance.prov.validation.report.json.Mapper
Matrix - Interface in org.openprovenance.prov.validation.matrix
MAX_VALUE - Static variable in class org.openprovenance.prov.validation.EventIndexer
membershipList - Variable in class org.openprovenance.prov.validation.Indexer
mentionOf - Variable in class org.openprovenance.prov.validation.report.TypeReport
mentionOfTable - Variable in class org.openprovenance.prov.validation.Indexer
merge(T, T) - Method in class org.openprovenance.prov.validation.Merger
Merger - Class in org.openprovenance.prov.validation: Class merging two statements of the same type.
Merger(ProvFactory, ProvUtilities, Hashtable<String, List<Statement>>, Indexer) - Constructor for class org.openprovenance.prov.validation.Merger
MergeReport - Class in org.openprovenance.prov.validation.report: Java class for MergeReport complex type.
MergeReport() - Constructor for class org.openprovenance.prov.validation.report.MergeReport
MergeReportInterface - Interface in org.openprovenance.prov.validation.report.json
minus_one - Static variable in class org.openprovenance.prov.validation.EventMatrix

N

namespace - Variable in class org.openprovenance.prov.validation.Indexer
newUnknown() - Method in class org.openprovenance.prov.validation.Gensym
newYesToAllConfig(ProvFactory, ObjectMaker) - Static method in class org.openprovenance.prov.validation.Config
nonEmptyCollectionURI - Static variable in class org.openprovenance.prov.validation.Types
nonStrictCycle - Variable in class org.openprovenance.prov.validation.report.ValidationReport
normalize() - Method in class org.openprovenance.prov.validation.VarTime

O

ObjectMaker - Interface in org.openprovenance.prov.validation
orderEvents() - Method in class org.openprovenance.prov.validation.EventMatrix
org.openprovenance.prov.validation - package org.openprovenance.prov.validation
org.openprovenance.prov.validation.matrix - package org.openprovenance.prov.validation.matrix
org.openprovenance.prov.validation.report - package org.openprovenance.prov.validation.report
org.openprovenance.prov.validation.report.json - package org.openprovenance.prov.validation.report.json
organizationURI - Static variable in class org.openprovenance.prov.validation.Types

P

Pair - Class in org.openprovenance.prov.validation.matrix: A Pair is a container for two coordinates, the "first" and the "second" one.
Pair<T1,T2> - Class in org.openprovenance.prov.validation
Pair(int, int) - Constructor for class org.openprovenance.prov.validation.matrix.Pair: Constructor for Pair.
Pair(int, int, int) - Constructor for class org.openprovenance.prov.validation.matrix.Pair
Pair(T1, T2) - Constructor for class org.openprovenance.prov.validation.Pair
personURI - Static variable in class org.openprovenance.prov.validation.Types
precede(Integer, Integer) - Method in class org.openprovenance.prov.validation.Constraints
PRECEDE - Static variable in class org.openprovenance.prov.validation.Constraints
PRECEDE_STRICT - Static variable in class org.openprovenance.prov.validation.Constraints
precedeStrict(Integer, Integer) - Method in class org.openprovenance.prov.validation.Constraints
primarySourceURI - Static variable in class org.openprovenance.prov.validation.Types
putInTable(Hashtable<Class, Hashtable<String, T>>, Class<?>, Hashtable<String, T>) - Method in class org.openprovenance.prov.validation.Indexer

Q

qualifiedNameMismatch - Variable in class org.openprovenance.prov.validation.Indexer
qualifiedNameMismatch - Variable in class org.openprovenance.prov.validation.Merger
qualifiedNameMismatch - Variable in class org.openprovenance.prov.validation.report.ValidationReport
quotationURI - Static variable in class org.openprovenance.prov.validation.Types

R

registerNamespaces(Namespace) - Method in class org.openprovenance.prov.validation.Indexer
remove(int, int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
removeUnifiedEntries() - Method in class org.openprovenance.prov.validation.Unification
removeUnifiedEntry1(Class<T>, Hashtable<String, T>, Hashtable<TwoKeys, T>) - Method in class org.openprovenance.prov.validation.Unification
removeUnifiedEntry2(Class<T>, Hashtable<String, T>) - Method in class org.openprovenance.prov.validation.Unification
reset() - Method in class org.openprovenance.prov.validation.VarTime
resolveDuplicate(Activity, Activity) - Method in class org.openprovenance.prov.validation.Indexer
resolveDuplicate(Agent, Agent) - Method in class org.openprovenance.prov.validation.Indexer
resolveDuplicate(Entity, Entity) - Method in class org.openprovenance.prov.validation.Indexer
resolveDuplicate(MentionOf, MentionOf) - Method in class org.openprovenance.prov.validation.Indexer
resolveDuplicate(T, T) - Method in class org.openprovenance.prov.validation.Indexer
revisionURI - Static variable in class org.openprovenance.prov.validation.Types
roundedOrder(int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
rowSet() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix: Returns a Set of all used "rows" in the matrix.

S

sameEndTime(String, Activity, WasEndedBy) - Method in class org.openprovenance.prov.validation.Merger
sameStartTime(String, Activity, WasStartedBy) - Method in class org.openprovenance.prov.validation.Merger
set(int, int, double) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
set(int, int, int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix: Sets the value of the matrix at the specified row and column.
set(int, int, Double) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix: Sets the value of the matrix at the specified row and column.
set(int, int, Double) - Method in interface org.openprovenance.prov.validation.matrix.Matrix: Sets the value of the matrix at the specified row and column.
set(Matrix) - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix
setDay(int) - Method in class org.openprovenance.prov.validation.VarTime
setDeposited(boolean) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the deposited property.
setDocument(Document) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the document property.
setFractionalSecond(BigDecimal) - Method in class org.openprovenance.prov.validation.VarTime
setHour(int) - Method in class org.openprovenance.prov.validation.VarTime
setId(QualifiedName) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the id property.
setKey(String) - Method in class org.openprovenance.prov.validation.report.MergeReport: Sets the value of the key property.
setKey(String) - Method in class org.openprovenance.prov.validation.report.TypeOverlap: Sets the value of the key property.
setKey(String) - Method in class org.openprovenance.prov.validation.report.TypeReport: Sets the value of the key property.
setMalformedStatements(MalformedStatements) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the malformedStatements property.
setMillisecond(int) - Method in class org.openprovenance.prov.validation.VarTime
setMinute(int) - Method in class org.openprovenance.prov.validation.VarTime
setMonth(int) - Method in class org.openprovenance.prov.validation.VarTime
setNamespace(Namespace) - Method in class org.openprovenance.prov.validation.report.ValidationReport
setNoUpdate(int, int, int) - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
setSecond(int) - Method in class org.openprovenance.prov.validation.VarTime
setSpecializationReport(SpecializationReport) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the specializationReport property.
setStatement(List<Statement>) - Method in class org.openprovenance.prov.validation.report.Dependencies
setTimezone(int) - Method in class org.openprovenance.prov.validation.VarTime
setTypeReport(TypeReport) - Method in class org.openprovenance.prov.validation.report.ValidationReport: Sets the value of the typeReport property.
setYear(int) - Method in class org.openprovenance.prov.validation.VarTime
setYear(BigInteger) - Method in class org.openprovenance.prov.validation.VarTime
softwareAgentURI - Static variable in class org.openprovenance.prov.validation.Types
SomeStatements - Class in org.openprovenance.prov.validation.report: Java class for Statements complex type.
SomeStatements() - Constructor for class org.openprovenance.prov.validation.report.SomeStatements
SparseMatrix - Class in org.openprovenance.prov.validation.matrix: Generic Class for sparsely populated matrices.
SparseMatrix(int, int) - Constructor for class org.openprovenance.prov.validation.matrix.SparseMatrix
specializationAttributesInference(Config) - Method in class org.openprovenance.prov.validation.Inference
specializationIsNotReflexive() - Method in class org.openprovenance.prov.validation.Inference
specializationIsNotReflexive(Config) - Method in class org.openprovenance.prov.validation.Inference
specializationOf - Variable in class org.openprovenance.prov.validation.report.SpecializationReport
specializationOf - Variable in class org.openprovenance.prov.validation.report.TypeReport
specializationOfList - Variable in class org.openprovenance.prov.validation.Indexer
specializationReport - Variable in class org.openprovenance.prov.validation.report.ValidationReport
SpecializationReport - Class in org.openprovenance.prov.validation.report: Java class for SpecializationReport complex type.
SpecializationReport() - Constructor for class org.openprovenance.prov.validation.report.SpecializationReport
SpecializationReportInterface - Interface in org.openprovenance.prov.validation.report.json
specializationTable - Variable in class org.openprovenance.prov.validation.Inference
startURI - Static variable in class org.openprovenance.prov.validation.Types
substitute(XMLGregorianCalendar, Hashtable<VarTime, XMLGregorianCalendar>) - Method in class org.openprovenance.prov.validation.Merger
substitute(QualifiedName, Hashtable<VarQNameWrapper, QualifiedName>) - Method in class org.openprovenance.prov.validation.Merger
successfulMerge - Variable in class org.openprovenance.prov.validation.Indexer
successfulMerge - Variable in class org.openprovenance.prov.validation.report.ValidationReport
summary() - Method in class org.openprovenance.prov.validation.Indexer
summary() - Method in class org.openprovenance.prov.validation.Inference

T

theURIs - Variable in class org.openprovenance.prov.validation.Types
toGregorianCalendar() - Method in class org.openprovenance.prov.validation.VarTime
toGregorianCalendar(TimeZone, Locale, XMLGregorianCalendar) - Method in class org.openprovenance.prov.validation.VarTime
toString() - Method in class org.openprovenance.prov.validation.ActivityEntry
toString() - Method in class org.openprovenance.prov.validation.EntityEntry
toString() - Method in class org.openprovenance.prov.validation.matrix.Pair
toString() - Method in class org.openprovenance.prov.validation.matrix.SparseMatrix
toString() - Method in class org.openprovenance.prov.validation.report.Dependencies
toString() - Method in class org.openprovenance.prov.validation.report.MalformedStatements
toString() - Method in class org.openprovenance.prov.validation.report.MergeReport
toString() - Method in class org.openprovenance.prov.validation.report.SomeStatements
toString() - Method in class org.openprovenance.prov.validation.report.SpecializationReport
toString() - Method in class org.openprovenance.prov.validation.report.TypeOverlap
toString() - Method in class org.openprovenance.prov.validation.report.TypeReport
toString() - Method in class org.openprovenance.prov.validation.report.ValidationReport
toString() - Method in class org.openprovenance.prov.validation.TwoKeys
toString() - Method in class org.openprovenance.prov.validation.VarTime
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.Dependencies
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.MalformedStatements
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.MergeReport
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.SomeStatements
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.SpecializationReport
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.TypeOverlap
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.TypeReport
toString(ToStringBuilder) - Method in class org.openprovenance.prov.validation.report.ValidationReport
toXMLFormat() - Method in class org.openprovenance.prov.validation.VarTime
TwoKeys - Class in org.openprovenance.prov.validation
TwoKeys(String, String) - Constructor for class org.openprovenance.prov.validation.TwoKeys
TwoKeys(QualifiedName, QualifiedName) - Constructor for class org.openprovenance.prov.validation.TwoKeys
TwoKeys(WasEndedBy) - Constructor for class org.openprovenance.prov.validation.TwoKeys
TwoKeys(WasGeneratedBy) - Constructor for class org.openprovenance.prov.validation.TwoKeys
TwoKeys(WasInvalidatedBy) - Constructor for class org.openprovenance.prov.validation.TwoKeys
TwoKeys(WasStartedBy) - Constructor for class org.openprovenance.prov.validation.TwoKeys
type - Variable in class org.openprovenance.prov.validation.report.TypeOverlap
typeChecker - Variable in class org.openprovenance.prov.validation.Validate
typeOverlap - Variable in class org.openprovenance.prov.validation.report.ValidationReport
TypeOverlap - Class in org.openprovenance.prov.validation.report: Java class for TypeOverlap complex type.
TypeOverlap() - Constructor for class org.openprovenance.prov.validation.report.TypeOverlap
typeOverlapTable - Variable in class org.openprovenance.prov.validation.Constraints
typeReport - Variable in class org.openprovenance.prov.validation.report.ValidationReport
TypeReport - Class in org.openprovenance.prov.validation.report: Java class for TypeReport complex type.
TypeReport() - Constructor for class org.openprovenance.prov.validation.report.TypeReport
Types - Class in org.openprovenance.prov.validation
Types(Indexer, ProvUtilities, Config) - Constructor for class org.openprovenance.prov.validation.Types
TypeTable() - Constructor for class org.openprovenance.prov.validation.Indexer.TypeTable

U

Unification - Class in org.openprovenance.prov.validation
Unification(Indexer, Uniqueness) - Constructor for class org.openprovenance.prov.validation.Unification
unify(XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.prov.validation.Merger
uniq - Variable in class org.openprovenance.prov.validation.Validate
uniqueAll(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_activityEndTime(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_activityStartTime(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_Record(Class<T>, Hashtable<String, T>, Hashtable<TwoKeys, T>, Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_wasEndedBy(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_wasGeneratedBy(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_wasInvalidatedBy(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
uniqueAll_wasStartedBy(Config) - Method in class org.openprovenance.prov.validation.Uniqueness
Uniqueness - Class in org.openprovenance.prov.validation: This class deals with uniqueness constraints, in the process unifying terms.
Uniqueness(Indexer) - Constructor for class org.openprovenance.prov.validation.Uniqueness
Unknown - Interface in org.openprovenance.prov.validation
updateSubstitutionTable(VarQName, QualifiedName) - Method in class org.openprovenance.prov.validation.Merger
uriTypeIndex - Variable in class org.openprovenance.prov.validation.Types
usageURI - Static variable in class org.openprovenance.prov.validation.Types
used - Variable in class org.openprovenance.prov.validation.report.TypeReport
usedTable - Variable in class org.openprovenance.prov.validation.Indexer
usedTypeTable - Variable in class org.openprovenance.prov.validation.Indexer

V

VAL_ID - Static variable in class org.openprovenance.prov.validation.Gensym
VAL_PREFIX - Static variable in class org.openprovenance.prov.validation.Gensym
VAL_TYPE_IGNORE_NS - Static variable in class org.openprovenance.prov.validation.Types
VAL_TYPE_NS - Static variable in class org.openprovenance.prov.validation.Types
VAL_URI - Static variable in class org.openprovenance.prov.validation.Gensym
validate(List<Statement>, boolean) - Method in class org.openprovenance.prov.validation.Validate
validate(Document) - Method in class org.openprovenance.prov.validation.Validate
Validate - Class in org.openprovenance.prov.validation
Validate(Config) - Constructor for class org.openprovenance.prov.validation.Validate
validationReport - Variable in class org.openprovenance.prov.validation.report.ValidationReport
ValidationReport - Class in org.openprovenance.prov.validation.report: Java class for ValidationReport complex type.
ValidationReport() - Constructor for class org.openprovenance.prov.validation.report.ValidationReport
ValidationReportInterface - Interface in org.openprovenance.prov.validation.report.json
validatorVersion - Static variable in class org.openprovenance.prov.validation.Validate
VarQName - Interface in org.openprovenance.prov.validation
VarQNameWrapper - Class in org.openprovenance.prov.validation: This class is introduced as a wrapper utility, to wrap a VarQName, so that they can be indexed according to their URI.
VarQNameWrapper(VarQName) - Constructor for class org.openprovenance.prov.validation.VarQNameWrapper
VarTime - Class in org.openprovenance.prov.validation
VarTime(String) - Constructor for class org.openprovenance.prov.validation.VarTime

W

wasAssociatedWith - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasAssociatedWithTable - Variable in class org.openprovenance.prov.validation.Indexer
wasAssociatedWithTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasAttributedTo - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasAttributedToTable - Variable in class org.openprovenance.prov.validation.Indexer
wasAttributedToTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasDerivedFrom - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasDerivedFromTable - Variable in class org.openprovenance.prov.validation.Indexer
wasDerivedFromTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasEndedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasEndedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasEndedByTable - Variable in class org.openprovenance.prov.validation.Uniqueness
wasEndedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasGeneratedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasGeneratedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasGeneratedByTable - Variable in class org.openprovenance.prov.validation.Uniqueness
wasGeneratedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInfluencedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasInfluencedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInfluencedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInformedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasInformedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInformedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInvalidatedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasInvalidatedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasInvalidatedByTable - Variable in class org.openprovenance.prov.validation.Uniqueness
wasInvalidatedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer
wasStartedBy - Variable in class org.openprovenance.prov.validation.report.TypeReport
wasStartedByTable - Variable in class org.openprovenance.prov.validation.Indexer
wasStartedByTable - Variable in class org.openprovenance.prov.validation.Uniqueness
wasStartedByTypeTable - Variable in class org.openprovenance.prov.validation.Indexer

Z

zero() - Method in class org.openprovenance.prov.validation.matrix.DenseMatrix

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