A C G H N O P S

A

apply(T, T) - Method in class org.pharmgkb.common.util.NoDuplicateMergeFunction

C

ChromosomeNameComparator - Class in org.pharmgkb.common.comparator

Comparator for chromosome names.

ChromosomeNameComparator() - Constructor for class org.pharmgkb.common.comparator.ChromosomeNameComparator

ChromosomePositionComparator - Class in org.pharmgkb.common.comparator

Comparator for chromosomal positions (in the format chrX:1234).

ChromosomePositionComparator() - Constructor for class org.pharmgkb.common.comparator.ChromosomePositionComparator

compare(String, String) - Method in class org.pharmgkb.common.comparator.ChromosomeNameComparator

compare(String, String) - Method in class org.pharmgkb.common.comparator.ChromosomePositionComparator

compare(String, String) - Method in class org.pharmgkb.common.comparator.HaplotypeNameComparator

G

getBaseFilename(Path) - Static method in class org.pharmgkb.common.util.PathUtils

Gets the base name of the file (i.e.

getComparator() - Static method in class org.pharmgkb.common.comparator.ChromosomeNameComparator

Gets an instance of this comparator.

getComparator() - Static method in class org.pharmgkb.common.comparator.ChromosomePositionComparator

Gets an instance of this comparator.

getComparator() - Static method in class org.pharmgkb.common.comparator.HaplotypeNameComparator

Gets an instance of this comparator.

getFilename(Path) - Static method in class org.pharmgkb.common.util.PathUtils

Gets the name of the file.

getPathToResource(String) - Static method in class org.pharmgkb.common.util.PathUtils

Converts a resource file name into a Path.

H

HaplotypeNameComparator - Class in org.pharmgkb.common.comparator

Comparator for haplotype names.

HaplotypeNameComparator() - Constructor for class org.pharmgkb.common.comparator.HaplotypeNameComparator

N

NoDuplicateMergeFunction<T> - Class in org.pharmgkb.common.util

This is a merge function that rejects duplicate keys.

NoDuplicateMergeFunction() - Constructor for class org.pharmgkb.common.util.NoDuplicateMergeFunction

O

org.pharmgkb.common.comparator - package org.pharmgkb.common.comparator

org.pharmgkb.common.util - package org.pharmgkb.common.util

P

PathUtils - Class in org.pharmgkb.common.util

Utility methods for working with Paths.

S

sf_comparator - Static variable in class org.pharmgkb.common.comparator.ChromosomePositionComparator

A C G H N O P S