org.pharmgkb.parser.vcf.model

Class BaseMetadata

java.lang.Object

org.pharmgkb.parser.vcf.model.BaseMetadata

Direct Known Subclasses:

IdMetadata

public class BaseMetadata
extends java.lang.Object

VCF metadata in the format XXX=<key=value,key=value,...>. The properties are case-sensitive.

Constructor Summary

Constructors

Constructor and Description
BaseMetadata(java.util.Map<java.lang.String,java.lang.String> properties)

Method Summary

Modifier and Type	Method and Description
protected void	ensureNoExtras(java.lang.String... names) Should be used only for base classes.
java.util.Map<java.lang.String,java.lang.String>	getPropertiesRaw()
java.util.Map<java.lang.String,java.lang.String>	getPropertiesUnquoted()
java.util.Set<java.lang.String>	getPropertyKeys()
java.lang.String	getPropertyRaw(java.lang.String key)
java.lang.String	getPropertyUnquoted(java.lang.String key)
void	putAndQuoteProperty(java.lang.String key, java.lang.String value)
void	putPropertyRaw(java.lang.String key, java.lang.String value)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BaseMetadata

public BaseMetadata(@Nonnull
                    java.util.Map<java.lang.String,java.lang.String> properties)

Method Detail

getPropertyUnquoted

@Nullable
public java.lang.String getPropertyUnquoted(@Nonnull
                                                       java.lang.String key)

getPropertyRaw

@Nullable
public java.lang.String getPropertyRaw(@Nonnull
                                                  java.lang.String key)

getPropertiesUnquoted

@Nonnull
public java.util.Map<java.lang.String,java.lang.String> getPropertiesUnquoted()

getPropertiesRaw

@Nonnull
public java.util.Map<java.lang.String,java.lang.String> getPropertiesRaw()

getPropertyKeys

@Nonnull
public java.util.Set<java.lang.String> getPropertyKeys()

putAndQuoteProperty

public void putAndQuoteProperty(@Nonnull
                                java.lang.String key,
                                @Nullable
                                java.lang.String value)

putPropertyRaw

public void putPropertyRaw(@Nonnull
                           java.lang.String key,
                           @Nullable
                           java.lang.String value)

ensureNoExtras

protected void ensureNoExtras(@Nonnull
                              java.lang.String... names)

Should be used only for base classes. Logs a warning if this metadata contains a property key not in the array passed.

Parameters:

names - An array of permitted property keys