org.pharmgkb.parser.vcf.model

Class ContigMetadata

java.lang.Object

org.pharmgkb.parser.vcf.model.BaseMetadata

org.pharmgkb.parser.vcf.model.IdMetadata

org.pharmgkb.parser.vcf.model.ContigMetadata

public class ContigMetadata
extends IdMetadata

VCF metadata for contig=<> elements.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ASSEMBLY
static java.lang.String	ID
static java.lang.String	LENGTH
static java.lang.String	MD5
static java.lang.String	SPECIES
static java.lang.String	TAXONOMY
static java.lang.String	URL

Constructor Summary

Constructors

Constructor and Description
ContigMetadata(java.util.Map<java.lang.String,java.lang.String> properties)
ContigMetadata(java.lang.String id, long length, java.lang.String assembly, java.lang.String md5, java.lang.String species, java.lang.String taxonomy, java.lang.String url)

Method Summary

Modifier and Type	Method and Description
java.lang.String	getAssembly()
long	getLength()
java.lang.String	getMd5()
java.lang.String	getSpecies()
java.lang.String	getTaxonomy()
java.lang.String	getUrl()

Methods inherited from class org.pharmgkb.parser.vcf.model.IdMetadata

getId

Methods inherited from class org.pharmgkb.parser.vcf.model.BaseMetadata

ensureNoExtras, getPropertiesRaw, getPropertiesUnquoted, getPropertyKeys, getPropertyRaw, getPropertyUnquoted, putAndQuoteProperty, putPropertyRaw

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final java.lang.String ID

See Also:

Constant Field Values

LENGTH

public static final java.lang.String LENGTH

See Also:

Constant Field Values

ASSEMBLY

public static final java.lang.String ASSEMBLY

See Also:

Constant Field Values

MD5

public static final java.lang.String MD5

See Also:

Constant Field Values

SPECIES

public static final java.lang.String SPECIES

See Also:

Constant Field Values

TAXONOMY

public static final java.lang.String TAXONOMY

See Also:

Constant Field Values

URL

public static final java.lang.String URL

See Also:

Constant Field Values

Constructor Detail

ContigMetadata

public ContigMetadata(@Nonnull
                      java.lang.String id,
                      long length,
                      @Nonnull
                      java.lang.String assembly,
                      @Nullable
                      java.lang.String md5,
                      @Nullable
                      java.lang.String species,
                      @Nullable
                      java.lang.String taxonomy,
                      @Nullable
                      java.lang.String url)

ContigMetadata

public ContigMetadata(@Nonnull
                      java.util.Map<java.lang.String,java.lang.String> properties)

Method Detail

getLength

public long getLength()

getAssembly

@Nullable
public java.lang.String getAssembly()

Returns:

Null only when invalid

getTaxonomy

@Nullable
public java.lang.String getTaxonomy()

getSpecies

@Nullable
public java.lang.String getSpecies()

getMd5

@Nullable
public java.lang.String getMd5()

getUrl

@Nullable
public java.lang.String getUrl()