org.pharmgkb.parser.vcf.model

Enum ReservedFormatProperty

java.lang.Object

java.lang.Enum<ReservedFormatProperty>

org.pharmgkb.parser.vcf.model.ReservedFormatProperty

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<ReservedFormatProperty>, ReservedProperty

public enum ReservedFormatProperty
extends java.lang.Enum<ReservedFormatProperty>
implements ReservedProperty

A FORMAT field specified as reserved in the VCF specification.

Enum Constant Summary

Enum Constants

Enum Constant and Description
AncestralHaplotypeId
CopyNumber
CopyNumberGenotypeQuality
CopyNumberLikelihood
Depth
ExpectedAlleleCounts
Filter
Genotype
GenotypeLikelihoods
GenotypeLikelihoodsOfHeterogenousPloidy
GenotypePosteriorProbabilitiesPhredScaled
GenotypeQualityConditional
HaplotypeId
HaplotypeQualities
MappingQuality
PhaseSet
PhasingQuality
PhredScaledGenotypeLikelihoods
PhredScoreForNovelty

Method Summary

Modifier and Type	Method and Description
java.lang.String	getDescription()
java.lang.String	getId()
java.lang.String	getNumber()
java.lang.Class	getType()
boolean	isList()
static ReservedFormatProperty	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static ReservedFormatProperty[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Genotype

public static final ReservedFormatProperty Genotype

Depth

public static final ReservedFormatProperty Depth

Filter

public static final ReservedFormatProperty Filter

GenotypeLikelihoods

public static final ReservedFormatProperty GenotypeLikelihoods

GenotypeLikelihoodsOfHeterogenousPloidy

public static final ReservedFormatProperty GenotypeLikelihoodsOfHeterogenousPloidy

PhredScaledGenotypeLikelihoods

public static final ReservedFormatProperty PhredScaledGenotypeLikelihoods

GenotypePosteriorProbabilitiesPhredScaled

public static final ReservedFormatProperty GenotypePosteriorProbabilitiesPhredScaled

GenotypeQualityConditional

public static final ReservedFormatProperty GenotypeQualityConditional

HaplotypeQualities

public static final ReservedFormatProperty HaplotypeQualities

PhaseSet

public static final ReservedFormatProperty PhaseSet

PhasingQuality

public static final ReservedFormatProperty PhasingQuality

ExpectedAlleleCounts

public static final ReservedFormatProperty ExpectedAlleleCounts

MappingQuality

public static final ReservedFormatProperty MappingQuality

CopyNumber

public static final ReservedFormatProperty CopyNumber

CopyNumberGenotypeQuality

public static final ReservedFormatProperty CopyNumberGenotypeQuality

CopyNumberLikelihood

public static final ReservedFormatProperty CopyNumberLikelihood

PhredScoreForNovelty

public static final ReservedFormatProperty PhredScoreForNovelty

HaplotypeId

public static final ReservedFormatProperty HaplotypeId

AncestralHaplotypeId

public static final ReservedFormatProperty AncestralHaplotypeId

Method Detail

values

public static ReservedFormatProperty[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ReservedFormatProperty c : ReservedFormatProperty.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ReservedFormatProperty valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

getId

@Nonnull
public java.lang.String getId()

Specified by:

getId in interface ReservedProperty

getDescription

@Nonnull
public java.lang.String getDescription()

Specified by:

getDescription in interface ReservedProperty

getType

@Nonnull
public java.lang.Class getType()

Specified by:

getType in interface ReservedProperty

getNumber

@Nullable
public java.lang.String getNumber()

isList

public boolean isList()

Specified by:

isList in interface ReservedProperty