org.pharmgkb.parser.vcf.model

Enum ReservedInfoProperty

java.lang.Object

java.lang.Enum<ReservedInfoProperty>

org.pharmgkb.parser.vcf.model.ReservedInfoProperty

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<ReservedInfoProperty>, ReservedProperty

public enum ReservedInfoProperty
extends java.lang.Enum<ReservedInfoProperty>
implements ReservedProperty

An INFO field specified as reserved in the VCF specification.

Enum Constant Summary

Enum Constants

Enum Constant and Description
AlleleCount
AlleleFrequency
AlleleNumber
AncestralAllele
BaseQuality
BreakpointId
Cigar
ConfidenceIntervalForAdjacencyCopyNumber
ConfidenceIntervalForEnd
ConfidenceIntervalForInsertedMaterial
ConfidenceIntervalForPosition
ConfidenceIntervalForSegmentCopyNumber
CopyNumberOfAdjacency
CopyNumberOfSegment
DbripId
Dbsnp
DbvarId
Depth
DgvId
End
EventId
Hapmap2
Hapmap3
HomologyLength
HomologySequence
Imprecise
MappingQuality
MappingQualityZeroCount
MateId
MobileElementInfo
MobileElementTransduction
Novel
NumberOfSamples
PartnerId
ReadDepthOfAdjacency
SomaticMutation
StrandBias
StructuralVariantLength
StructuralVariantType Note that the VCF 4.2 spec calls this "SYTYPE", which is clearly a typo.
ThousandGenomes
Validated

Method Summary

Modifier and Type	Method and Description
java.lang.String	getDescription()
java.lang.String	getId()
java.lang.String	getNumber()
java.lang.Class	getType()
boolean	isList()
static ReservedInfoProperty	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static ReservedInfoProperty[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

AncestralAllele

public static final ReservedInfoProperty AncestralAllele

AlleleCount

public static final ReservedInfoProperty AlleleCount

AlleleFrequency

public static final ReservedInfoProperty AlleleFrequency

AlleleNumber

public static final ReservedInfoProperty AlleleNumber

BaseQuality

public static final ReservedInfoProperty BaseQuality

Cigar

public static final ReservedInfoProperty Cigar

Dbsnp

public static final ReservedInfoProperty Dbsnp

Depth

public static final ReservedInfoProperty Depth

Hapmap2

public static final ReservedInfoProperty Hapmap2

Hapmap3

public static final ReservedInfoProperty Hapmap3

MappingQuality

public static final ReservedInfoProperty MappingQuality

MappingQualityZeroCount

public static final ReservedInfoProperty MappingQualityZeroCount

NumberOfSamples

public static final ReservedInfoProperty NumberOfSamples

StrandBias

public static final ReservedInfoProperty StrandBias

SomaticMutation

public static final ReservedInfoProperty SomaticMutation

Validated

public static final ReservedInfoProperty Validated

ThousandGenomes

public static final ReservedInfoProperty ThousandGenomes

Imprecise

public static final ReservedInfoProperty Imprecise

Novel

public static final ReservedInfoProperty Novel

End

public static final ReservedInfoProperty End

StructuralVariantType

public static final ReservedInfoProperty StructuralVariantType

Note that the VCF 4.2 spec calls this "SYTYPE", which is clearly a typo.

StructuralVariantLength

public static final ReservedInfoProperty StructuralVariantLength

ConfidenceIntervalForPosition

public static final ReservedInfoProperty ConfidenceIntervalForPosition

ConfidenceIntervalForEnd

public static final ReservedInfoProperty ConfidenceIntervalForEnd

HomologyLength

public static final ReservedInfoProperty HomologyLength

HomologySequence

public static final ReservedInfoProperty HomologySequence

BreakpointId

public static final ReservedInfoProperty BreakpointId

MobileElementInfo

public static final ReservedInfoProperty MobileElementInfo

MobileElementTransduction

public static final ReservedInfoProperty MobileElementTransduction

DgvId

public static final ReservedInfoProperty DgvId

DbvarId

public static final ReservedInfoProperty DbvarId

DbripId

public static final ReservedInfoProperty DbripId

MateId

public static final ReservedInfoProperty MateId

PartnerId

public static final ReservedInfoProperty PartnerId

EventId

public static final ReservedInfoProperty EventId

ConfidenceIntervalForInsertedMaterial

public static final ReservedInfoProperty ConfidenceIntervalForInsertedMaterial

ReadDepthOfAdjacency

public static final ReservedInfoProperty ReadDepthOfAdjacency

CopyNumberOfSegment

public static final ReservedInfoProperty CopyNumberOfSegment

CopyNumberOfAdjacency

public static final ReservedInfoProperty CopyNumberOfAdjacency

ConfidenceIntervalForSegmentCopyNumber

public static final ReservedInfoProperty ConfidenceIntervalForSegmentCopyNumber

ConfidenceIntervalForAdjacencyCopyNumber

public static final ReservedInfoProperty ConfidenceIntervalForAdjacencyCopyNumber

Method Detail

values

public static ReservedInfoProperty[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (ReservedInfoProperty c : ReservedInfoProperty.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static ReservedInfoProperty valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

getId

@Nonnull
public java.lang.String getId()

Specified by:

getId in interface ReservedProperty

getDescription

@Nonnull
public java.lang.String getDescription()

Specified by:

getDescription in interface ReservedProperty

getType

@Nonnull
public java.lang.Class getType()

Specified by:

getType in interface ReservedProperty

getNumber

@Nonnull
public java.lang.String getNumber()

isList

public boolean isList()

Specified by:

isList in interface ReservedProperty