org.pharmgkb.parser.vcf.model

Class VcfMetadata.Builder

java.lang.Object

org.pharmgkb.parser.vcf.model.VcfMetadata.Builder

Enclosing class:

VcfMetadata

public static class VcfMetadata.Builder
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
Builder()

Method Summary

Modifier and Type	Method and Description
VcfMetadata.Builder	addAlt(IdDescriptionMetadata md)
VcfMetadata.Builder	addContig(ContigMetadata md)
VcfMetadata.Builder	addFilter(IdDescriptionMetadata md)
VcfMetadata.Builder	addFormat(FormatMetadata md)
VcfMetadata.Builder	addInfo(InfoMetadata md)
VcfMetadata.Builder	addPedigree(BaseMetadata md)
VcfMetadata.Builder	addRawProperty(java.lang.String name, java.lang.String value)
VcfMetadata.Builder	addSample(IdDescriptionMetadata md)
VcfMetadata	build()
VcfMetadata.Builder	setColumns(java.util.List<java.lang.String> cols)
VcfMetadata.Builder	setFileFormat(java.lang.String fileFormat) Sets the VCF version string.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Builder

public Builder()

Method Detail

setFileFormat

public VcfMetadata.Builder setFileFormat(@Nonnull
                                         java.lang.String fileFormat)

Sets the VCF version string.

Parameters:

fileFormat - Ex: "VCFv4.2"

addAlt

public VcfMetadata.Builder addAlt(@Nonnull
                                  IdDescriptionMetadata md)

addInfo

public VcfMetadata.Builder addInfo(@Nonnull
                                   InfoMetadata md)

addFilter

public VcfMetadata.Builder addFilter(@Nonnull
                                     IdDescriptionMetadata md)

addFormat

public VcfMetadata.Builder addFormat(@Nonnull
                                     FormatMetadata md)

addContig

public VcfMetadata.Builder addContig(@Nonnull
                                     ContigMetadata md)

addSample

public VcfMetadata.Builder addSample(@Nonnull
                                     IdDescriptionMetadata md)

addPedigree

public VcfMetadata.Builder addPedigree(@Nonnull
                                       BaseMetadata md)

addRawProperty

public VcfMetadata.Builder addRawProperty(@Nonnull
                                          java.lang.String name,
                                          @Nonnull
                                          java.lang.String value)

setColumns

public VcfMetadata.Builder setColumns(@Nonnull
                                      java.util.List<java.lang.String> cols)

build

@Nonnull
public VcfMetadata build()