org.pharmgkb.parser.vcf.model

Class VcfSample

java.lang.Object

org.pharmgkb.parser.vcf.model.VcfSample

public class VcfSample
extends java.lang.Object

This class contains sample data for a VCF position line.

Constructor Summary

Constructors

Constructor and Description
VcfSample(java.util.LinkedHashMap<java.lang.String,java.lang.String> properties)
VcfSample(java.util.List<java.lang.String> keys, java.util.List<java.lang.String> values)

Method Summary

Modifier and Type	Method and Description
void	clearProperties()
boolean	containsProperty(ReservedFormatProperty key)
boolean	containsProperty(java.lang.String key)
<T> T	getProperty(ReservedFormatProperty key) Returns the value for the reserved property as the type specified by both ReservedFormatProperty.getType() and ReservedFormatProperty.isList().
java.lang.String	getProperty(java.lang.String key)
java.util.Set<java.lang.String>	getPropertyKeys()
java.util.Set<java.util.Map.Entry<java.lang.String,java.lang.String>>	propertyEntrySet()
void	putProperty(ReservedFormatProperty key, java.lang.String value)
void	putProperty(java.lang.String key, java.lang.String value)
void	removeProperty(ReservedFormatProperty key)
void	removeProperty(java.lang.String key)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfSample

public VcfSample(@Nullable
                 java.util.List<java.lang.String> keys,
                 @Nullable
                 java.util.List<java.lang.String> values)

VcfSample

public VcfSample(@Nonnull
                 java.util.LinkedHashMap<java.lang.String,java.lang.String> properties)

Method Detail

getProperty

@Nullable
public java.lang.String getProperty(@Nonnull
                                               java.lang.String key)

getProperty

@Nullable
public <T> T getProperty(@Nonnull
                                    ReservedFormatProperty key)

Returns the value for the reserved property as the type specified by both ReservedFormatProperty.getType() and ReservedFormatProperty.isList().

Type Parameters:

T - The type specified by ReservedInfoProperty.getType() if ReservedFormatProperty.isList() is false; otherwise List<V> where V is the type specified by ReservedFormatProperty.getType().

containsProperty

public boolean containsProperty(@Nonnull
                                java.lang.String key)

containsProperty

public boolean containsProperty(@Nonnull
                                ReservedFormatProperty key)

putProperty

public void putProperty(@Nonnull
                        java.lang.String key,
                        @Nullable
                        java.lang.String value)

putProperty

public void putProperty(@Nonnull
                        ReservedFormatProperty key,
                        @Nullable
                        java.lang.String value)

removeProperty

public void removeProperty(@Nonnull
                           java.lang.String key)

removeProperty

public void removeProperty(@Nonnull
                           ReservedFormatProperty key)

clearProperties

public void clearProperties()

getPropertyKeys

@Nonnull
public java.util.Set<java.lang.String> getPropertyKeys()

Returns:

A set of the property keys, which has guaranteed order

propertyEntrySet

@Nonnull
public java.util.Set<java.util.Map.Entry<java.lang.String,java.lang.String>> propertyEntrySet()