| Interface | Description |
|---|---|
| ReservedProperty |
A field specified as reserved in the VCF specification.
|
| Class | Description |
|---|---|
| AltStructuralVariant |
A strictly validated VCF metadata ALT code of the form:
##ALT=<ID=type,Description=description>
Where ID is a colon-delimited list of identifiers. |
| BaseMetadata |
VCF metadata in the format XXX=<key=value,key=value,...>.
|
| ContigMetadata |
VCF metadata for contig=<> elements.
|
| FormatMetadata |
This class represents a single VCF FORMAT metadata line.
|
| IdDescriptionMetadata |
This class represents a single VCF metadata line with an id and description.
|
| IdMetadata |
A VCF metadata element with an Id (called "ID").
|
| InfoMetadata |
This class represents a single VCF INFO metadata line.
|
| VcfMetadata |
This class captures all of the VCF metadata from a VCF file.
|
| VcfMetadata.Builder | |
| VcfPosition |
This class contains the basic data (the first 9 columns) for a VCF position line.
|
| VcfSample |
This class contains sample data for a VCF position line.
|
| Enum | Description |
|---|---|
| FormatType |
This enum represents the Type field in a VCF FORMAT metadata line.
|
| InfoType |
This enum represents the Type field in a VCF INFO metadata line.
|
| ReservedFormatProperty |
A FORMAT field specified as reserved in the VCF specification.
|
| ReservedInfoProperty |
An INFO field specified as reserved in the VCF specification.
|
| ReservedStructuralVariantCode |
A reserved identifier for VCF ALT codes of structural variants.
|
| SpecialVcfNumber |
A reserved value for the "Number" field in INFO and FORMAT metadata entries.
|