Package org.pharmgkb.parser.vcf

Class VcfParser.Builder

java.lang.Object

org.pharmgkb.parser.vcf.VcfParser.Builder

Enclosing class:

VcfParser

public static class VcfParser.Builder
extends Object

Constructor Summary

Constructors

Constructor	Description
Builder()

Method Summary

Modifier and Type	Method	Description
VcfParser	build()
VcfParser.Builder	fromFile(Path dataFile)	Provides the Path to the VCF file to parse.
VcfParser.Builder	fromReader(BufferedReader reader)	Provides a BufferedReader to the beginning of the VCF file to parse.
VcfParser.Builder	parseWith(VcfLineParser lineParser)
VcfParser.Builder	rsidsOnly()	Tells parser to ignore data lines that are not associated with an RSID.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Builder

public Builder()

Method Details

fromFile

public VcfParser.Builder fromFile(@Nonnull
 Path dataFile)

Provides the Path to the VCF file to parse.

fromReader

public VcfParser.Builder fromReader(@Nonnull
 BufferedReader reader)

Provides a BufferedReader to the beginning of the VCF file to parse.

rsidsOnly

public VcfParser.Builder rsidsOnly()

Tells parser to ignore data lines that are not associated with an RSID.

parseWith

public VcfParser.Builder parseWith(@Nonnull
 VcfLineParser lineParser)

build

public VcfParser build()
                throws IOException

Throws:

IOException