Package org.pharmgkb.parser.vcf.model

Class VcfMetadata.Builder

java.lang.Object

org.pharmgkb.parser.vcf.model.VcfMetadata.Builder

Enclosing class:

VcfMetadata

public static class VcfMetadata.Builder
extends Object

Constructor Summary

Constructors

Constructor	Description
Builder()

Method Summary

Modifier and Type	Method	Description
VcfMetadata.Builder	addAlt(IdDescriptionMetadata md)
VcfMetadata.Builder	addContig(ContigMetadata md)
VcfMetadata.Builder	addFilter(IdDescriptionMetadata md)
VcfMetadata.Builder	addFormat(FormatMetadata md)
VcfMetadata.Builder	addInfo(InfoMetadata md)
VcfMetadata.Builder	addPedigree(BaseMetadata md)
VcfMetadata.Builder	addRawProperty(String name, String value)
VcfMetadata.Builder	addSample(IdDescriptionMetadata md)
VcfMetadata	build()
VcfMetadata.Builder	setColumns(List<String> cols)
VcfMetadata.Builder	setFileFormat(String fileFormat)	Sets the VCF version string.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Builder

public Builder()

Method Details

setFileFormat

public VcfMetadata.Builder setFileFormat(@Nonnull
 String fileFormat)

Sets the VCF version string.

Parameters:

fileFormat - Ex: "VCFv4.2"

addAlt

public VcfMetadata.Builder addAlt(@Nonnull
 IdDescriptionMetadata md)

addInfo

public VcfMetadata.Builder addInfo(@Nonnull
 InfoMetadata md)

addFilter

public VcfMetadata.Builder addFilter(@Nonnull
 IdDescriptionMetadata md)

addFormat

public VcfMetadata.Builder addFormat(@Nonnull
 FormatMetadata md)

addContig

public VcfMetadata.Builder addContig(@Nonnull
 ContigMetadata md)

addSample

public VcfMetadata.Builder addSample(@Nonnull
 IdDescriptionMetadata md)

addPedigree

public VcfMetadata.Builder addPedigree(@Nonnull
 BaseMetadata md)

addRawProperty

public VcfMetadata.Builder addRawProperty(@Nonnull
 String name,
 @Nonnull
 String value)

setColumns

public VcfMetadata.Builder setColumns(@Nonnull
 List<String> cols)

build

@Nonnull
public VcfMetadata build()