Package org.pharmgkb.parser.vcf

Class VcfFormatException

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

org.pharmgkb.parser.vcf.VcfFormatException

All Implemented Interfaces:

Serializable

public class VcfFormatException
extends RuntimeException

This exception indicates a VCF format error was found while parsing the VCF file.

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
VcfFormatException(int lineNumber, String section, Throwable ex)
VcfFormatException(String msg)
VcfFormatException(String msg, int lineNumber)
VcfFormatException(String msg, Throwable ex)

Method Summary

Modifier and Type	Method	Description
void	addMetadata(int lineNumber, String section)
int	getLineNumber()
String	getMessage()
String	toString()

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

VcfFormatException

public VcfFormatException(String msg)

VcfFormatException

public VcfFormatException(String msg,
 int lineNumber)

VcfFormatException

public VcfFormatException(String msg,
 Throwable ex)

VcfFormatException

public VcfFormatException(int lineNumber,
 String section,
 Throwable ex)

Method Details

addMetadata

public void addMetadata(int lineNumber,
 String section)

getMessage

public String getMessage()

Overrides:

getMessage in class Throwable

getLineNumber

public int getLineNumber()

toString

public String toString()

Overrides:

toString in class Throwable