Package org.pharmgkb.parser.vcf

Interface VcfTransformation

public interface VcfTransformation

A transformation applied to VCF data lines and metadata.

Method Summary

Modifier and Type	Method	Description
default boolean	transformDataLine(VcfMetadata metadata, VcfPosition position, List<VcfSample> sampleData)	Modifies the arguments position and sampleData.
default void	transformMetadata(VcfMetadata metadata)	Modifies the argument metadata.

Method Details

transformMetadata

default void transformMetadata(@Nonnull
 VcfMetadata metadata)

Modifies the argument metadata. The default method does nothing.

transformDataLine

default boolean transformDataLine(@Nonnull
 VcfMetadata metadata,
 @Nonnull
 VcfPosition position,
 @Nonnull
 List<VcfSample> sampleData)

Modifies the arguments position and sampleData. Should not modify metadata. The default method does nothing.

Returns:

If false, the VcfPosition will be removed